Winship authored publications for January 2016

Various first authors and senior authors from Winship Cancer Institute have published 73 studies in major medical and scientific journals in the past month.

Here is a complete list of published articles by first authors from Winship (in descending chronological order):

• Gene integrated set profile analysis: a context-based approach for inferring biological endpoints. Kowalski J, Dwivedi B, Newman S, Switchenko JM, Pauly R, Gutman DA, Arora J, Gandhi K, Ainslie K, Doho G, Qin Z, Moreno CS, Rossi MR,Vertino PM, Lonial S, Bernal-Mizrachi L, Boise LH. Nucleic acids research. 2016; PubMed PMID: 26826710.
• What Predicts an Advanced-Stage Diagnosis of Breast Cancer? Sorting out the Influence of Method of Detection, Access to Care and Biological Factors. Lipscomb J, Fleming ST, Trentham-Dietz A, Kimmick G, Wu XC, Morris CR, Zhang K, Smith RA, Anderson RT, Sabatino SA. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2016; PubMed PMID: 26819266.
• Smoke-Free Public Policies and Voluntary Policies in Personal Settings in Tbilisi, Georgia: A Qualitative Study. Berg CJ, Smith SA, Bascombe TM, Maglakelidze N, Starua L, Topuridze M. International journal of environmental research and public health. 2016; 13(2). PubMed PMID: 26821035.
• Interactions between breast cancer susceptibility loci and menopausal hormone therapy in relationship to breast cancer in the Breast and Prostate Cancer Cohort Consortium. Gaudet MM, Barrdahl M, Lindström S, Travis RC, Auer PL, Buring JE, Chanock SJ, Heather Eliassen A, Gapstur SM, Giles GG, Gunter M, Haiman C, Hunter DJ, Joshi AD, Kaaks R, Khaw KT, Lee IM, Le Marchand L, Milne RL, Peeters PH, Sund M, Tamimi R, Trichopoulou A, Weiderpass E, Yang XR, Prentice RL, Feigelson HS, Canzian F, Kraft P. Breast cancer research and treatment. 2016; PubMed PMID: 26802016.
• Adjuvant therapy for nonsmall cell lung cancer: recent advances and future perspectives. Pakkala S, Ramalingam SS. Current opinion in oncology. 2016; PubMed PMID: 26809014.
• Liver transplantation from uncontrolled DCD donors: It's time to go back to basics. Magliocca JF. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 2016; PubMed PMID: 26773968.
• Recent Advances in C-H Functionalization. Davies HM, Morton D. The Journal of organic chemistry. 2016; 81(2):343-50. PubMed PMID: 26769355.
• Aquaporins: Their role in gastrointestinal malignancies. Nagaraju GP, Basha R, Rajitha B, Alese OB, Alam A, Pattnaik S, El-Rayes B. Cancer letters. 2016; PubMed PMID: 26780474.
• Dacomitinib versus erlotinib in patients with EGFR-mutated advanced nonsmall-cell lung cancer (NSCLC): pooled subset analyses from two randomized trials. Ramalingam SS, O'Byrne K, Boyer M, Mok T, Jänne PA, Zhang H, Liang J, Taylor I, Sbar EI, Paz-Ares L. Annals of oncology : official journal of the European Society for Medical Oncology / ESMO. 2016; PubMed PMID: 26768165.
• Conceptual convergence: increased inflammation is associated with increased basal ganglia glutamate in patients with major depression. Haroon E, Fleischer CC, Felger JC, Chen X, Woolwine BJ, Patel T, Hu XP, Miller AH. Molecular psychiatry. 2016; PubMed PMID: 26754953.
• Identifying risk factors for B-cell lymphoma. Flowers CR, Skibola CF. Blood. 2016; 127(1):10-1. PubMed PMID: 26744436.
• Prostate cancer detection with magnetic resonance-ultrasound fusion biopsy: The role of systematic and targeted biopsies. Filson CP, Natarajan S, Margolis DJ, Huang J, Lieu P, Dorey FJ, Reiter RE, Marks LS. Cancer. 2016; PubMed PMID: 26749141.
• Daratumumab monotherapy in patients with treatment-refractory multiple myeloma (SIRIUS): an open-label, randomized, phase 2 trial. Lonial S, Weiss BM, Usmani SZ, Singhal S, Chari A, Bahlis NJ, Belch A, Krishnan A, Vescio RA, Mateos MV, Mazumder A, Orlowski RZ, Sutherland HJ, Bladé J, Scott EC, Oriol A, Berdeja J, Gharibo M, Stevens DA, LeBlanc R, Sebag M, Callander N, Jakubowiak A, White D, de la Rubia J, Richardson PG, Lisby S, Feng H, Uhlar CM, Khan I, Ahmadi T, Voorhees PM. Lancet (London, England). 2016; PubMed PMID: 26778538.
• Author response to Letter to the Editor regarding: Why is it appropriate to recommend human papillomavirus vaccination as cervical cancer prevention? Bednarczyk RA, Figueroa-Downing D, Ault K. American journal of obstetrics and gynecology. 2016; PubMed PMID: 26767793.
• Alcohol Consumption and Urinary Estrogens and Estrogen Metabolites in Premenopausal Women. Hartman TJ, Sisti JS, Hankinson SE, Xu X, Eliassen AH, Ziegler R. Hormones & cancer. 2016; PubMed PMID: 26728472.
• Pathologic Evaluation and Reporting of Intraductal Papillary Mucinous Neoplasms of the Pancreas and Other Tumoral Intraepithelial Neoplasms of Pancreatobiliary Tract: Recommendations of Verona Consensus Meeting. Adsay V, Mino-Kenudson M, Furukawa T, Basturk O, Zamboni G, Marchegiani G, Bassi C, Salvia R, Malleo G, Paiella S, Wolfgang CL, Matthaei H, Offerhaus GJ, Adham M, Bruno MJ, Reid MD, Krasinskas A, Klöppel G, Ohike N, Tajiri T, Jang KT, Roa JC, Allen P, Castillo CF, Jang JY, Klimstra DS, Hruban RH, . Annals of surgery. 2016; 263(1):162-177. PubMed PMID: 25775066; PubMed Central PMCID: PMC4568174.
• Targeting the Janus-activated kinase-2-STAT3 signalling pathway in pancreatic cancer using the HSP90 inhibitor ganetespib. Nagaraju GP, Mezina A, Shaib WL, Landry J, El-Rayes BF. European journal of cancer (Oxford, England : 1990). 2016; 52:109-119. PubMed PMID: 26682870.
• Impact of Improving Home Environments on Energy Intake and Physical Activity: A Randomized Controlled Trial. Kegler MC, Haardörfer R, Alcantara IC, Gazmararian JA, Veluswamy JK, Hodge TL, Addison AR, Hotz JA. American journal of public health. 2016; 106(1):143-52. PubMed PMID: 26696290.
• HIV-1 Reverse Transcriptase-Based Assay to Determine Cellular dNTP Concentrations. Hollenbaugh JA, Kim B. Methods in molecular biology (Clifton, N.J.). 2016; 1354:61-70. PubMed PMID: 26714705.
• A Persistent Interest in Viruses. Speck S. PLoS pathogens. 2016; 12(1):e1005327. PubMed PMID: 26766204.

And here is a complete list of published articles by last (senior) authors from Winship (in descending chronological order):

• The impact of home, work, and church environments on fat intake over time among rural residents: a longitudinal observational study. Haardörfer R, Alcantara I, Addison A, Glanz K, Kegler MC. BMC public health. 2016; 16(1):90. PubMed PMID: 26825701.
• Gene integrated set profile analysis: a context-based approach for inferring biological endpoints. Kowalski J, Dwivedi B, Newman S, Switchenko JM, Pauly R, Gutman DA, Arora J, Gandhi K, Ainslie K, Doho G, Qin Z, Moreno CS, Rossi MR,Vertino PM, Lonial S, Bernal-Mizrachi L, Boise LH. Nucleic acids research. 2016; PubMed PMID: 26826710.
• Pancreatic Ductal Adenocarcinoma is Spread to the Peripancreatic Soft Tissue in the Majority of Resected Cases, Rendering the AJCC T-Stage Protocol (7th Edition) Inapplicable and Insignificant: A Size-Based Staging System (pT1: ≤2, pT2: >2-≤4, pT3: >4 cm) is More Valid and Clinically Relevant. Saka B, Balci S, Basturk O, Bagci P, Postlewait LM, Maithel S, Knight J, El-Rayes B, Kooby D, Sarmiento J, Muraki T, Oliva I, Bandyopadhyay S, Akkas G, Goodman M, Reid MD,Krasinskas A, Everett R, Adsay V. Annals of surgical oncology. 2016; PubMed PMID: 26832882.
• Antiretroviral therapy induces a rapid increase in bone resorption that is positively associated with the magnitude of immune reconstitution in HIV infection. Ofotokun I, Titanji K, Vunnava A, Roser-Page S, Vikulina T, Villinger F, Rogers K, Sheth AN, Lahiri CD, Lennox JL, Weitzmann MN. AIDS (London, England). 2016; 30(3):405-14. PubMed PMID: 26760232.
• Esterase-Sensitive Prodrugs with Tunable Release Rates and Direct Generation of Hydrogen Sulfide. Zheng Y, Yu B, Ji K, Pan Z, Chittavong V, Wang B. Angewandte Chemie (International ed. in English). 2016; PubMed PMID: 26822005.
• Focal Hepatic Hot Spot From Superior Vena Cava Occlusion Visualized on Ventilation/Perfusion Scintigraphy With Contrast-Enhanced CT Correlate. Lawrence M, Schuster DM. Clinical nuclear medicine. 2016; PubMed PMID: 26825208.
• Where should a laminoplasty start? The effect of the proximal level on post-laminoplasty loss of lordosis. Michael KW, Neustein TM, Rhee JM. The spine journal : official journal of the North American Spine Society. 2016; PubMed PMID: 26828011.
• Maternally provided LSD1/KDM1A enables the maternal-to-zygotic transition and prevents defects that manifest postnatally. Wasson JA, Simon AK, Myrick DA, Wolf G, Driscoll S, Pfaff SL, Macfarlan TS, Katz DJ. eLife. 2016; 5. PubMed PMID: 26814574.
• Differential methylation analysis for BS-seq data under general experimental design. Park Y, Wu H. Bioinformatics (Oxford, England). 2016; PubMed PMID: 26819470.
• Primary healthcare provider knowledge, beliefs and clinic-based practices regarding alternative tobacco products and marijuana: a qualitative study. Bascombe TM, Scott KN, Ballard D, Smith SA, Thompson W, Berg CJ. Health education research. 2016; PubMed PMID: 26802106.
• Adjuvant therapy for nonsmall cell lung cancer: recent advances and future perspectives. Pakkala S, Ramalingam SS. Current opinion in oncology. 2016; PubMed PMID: 26809014.
• Yield of Urinalysis Screening in Pediatric Cancer Survivors. Ramirez MD, Mertens AC, Esiashvili N, Meacham LR, Wasilewski-Masker K. Pediatric blood & cancer. 2016; PubMed PMID: 26797960.
• Safety and Efficacy of Ureteral Stent Placement at the Bedside Under Local Anesthesia. Nourparvar P, Leung A, Shrewsberry AB, Weiss AD, Patil D, Atallah H, Ogan K, Carney KJ, Master VA. The Journal of urology. 2016; PubMed PMID: 26804752.
• Limits to the precision of gradient sensing with spatial communication and temporal integration. Mugler A, Levchenko A, Nemenman I. Proceedings of the National Academy of Sciences of the United States of America. 2016; PubMed PMID: 26792517.
• Perfluorooctanoic acid exposure and natural menopause: A longitudinal study in a community cohort. Dhingra R, Darrow LA, Klein M, Winquist A, Steenland K. Environmental research. 2016; 146:323-330. PubMed PMID: 26802619.
• Clinical Validation and Implementation of a Targeted Next-Generation Sequencing Assay to Detect Somatic Variants in Non-Small Cell Lung, Melanoma, and Gastrointestinal Malignancies. Fisher KE, Zhang L, Wang J, Smith GH, Newman S, Schneider TM, Pillai RN, Kudchadkar RR, Owonikoko TK, Ramalingam SS, Lawson DH, Delman KA, El-Rayes BF, Wilson MM, Sullivan HC, Morrison AS, Balci S, Adsay NV, Gal AA, Sica GL, Saxe DF, Mann KP, Hill CE, Khuri FR,Rossi MR. The Journal of molecular diagnostics : JMD. 2016; PubMed PMID: 26801070.
• Response: increased complications associated with feeding jejunostomy in gastrectomy for gastric cancer: Chicken or the egg? Postlewait LM, Maithel SK. Journal of surgical oncology. 2016; PubMed PMID: 26776830.
• Liver transplantation from uncontrolled DCD donors: It's time to go back to basics. Magliocca JF. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 2016; PubMed PMID: 26773968.
• The Society of Thoracic Surgeons Composite Score for Rating Program Performance for Lobectomy for Lung Cancer. Kozower BD, O'Brien SM, Kosinski AS, Magee MJ, Dokholyan R, Jacobs JP, Shahian DM, Wright CD, Fernandez FG. The Annals of thoracic surgery. 2016; PubMed PMID: 26785936.
• Unexpected Allosteric Network Contributes to LRH-1 Co-regulator Selectivity. Musille PM, Kossmann BR, Kohn JA, Ivanov I, Ortlund EA. The Journal of biological chemistry. 2016; 291(3):1411-1426. PubMed PMID: 26553876.
• Aquaporins: Their role in gastrointestinal malignancies. Nagaraju GP, Basha R, Rajitha B, Alese OB, Alam A, Pattnaik S, El-Rayes B. Cancer letters. 2016; PubMed PMID: 26780474.
• Differences in Women's Use of Medical Help for Becoming Pregnant by the Level of Urbanization of County of Residence in Georgia. Chin HB, Kramer MR, Mertens AC, Spencer JB, Howards PP. The Journal of rural health : official journal of the American Rural Health Association and the National Rural Health Care Association. 2016; PubMed PMID: 26769080.
• Intracranial Transplantation of Hypoxia-Preconditioned iPS Cell-derived Neural Progenitor Cells Alleviates Neuropsychiatric Defects after Traumatic Brain Injury in Juvenile Rats. Wei ZZ, Lee JH, Zhang Y, Zhu YB, Deveau TC, Gu X, Winter MM, Li J, Wei L, Yu SP. Cell transplantation. 2016; PubMed PMID: 26766038.
• Addressing issues associated with evaluating prediction models for survival endpoints based on the concordance statistic. Wang M, Long Q. Biometrics. 2016; PubMed PMID: 26756274.
• Conceptual convergence: increased inflammation is associated with increased basal ganglia glutamate in patients with major depression. Haroon E, Fleischer CC, Felger JC, Chen X, Woolwine BJ, Patel T, Hu XP, Miller AH. Molecular psychiatry. 2016; PubMed PMID: 26754953.
• Improved Splenic Function After Hematopoietic Stem Cell Transplant for Sickle Cell Disease. Nickel RS, Seashore E, Lane PA, Alazraki AL, Horan JT, Bhatia M, Haight AE. Pediatric blood & cancer. 2016; PubMed PMID: 26757445.
• Psychiatry Departments Under Constrained Funding Mechanisms or What Is a Chairperson to Do? Magen J, Rapaport MH. Academic psychiatry : the journal of the American Association of Directors of Psychiatric Residency Training and the Association for Academic Psychiatry. 2016; PubMed PMID: 26758737.
• Mitochondrial Polymerase Gamma Dysfunction and Aging Cause Cardiac Nuclear DNA Methylation Changes. Koczor CA, Ludlow I, Fields EJ, Jiao Z, Ludaway T, Russ R, Lewis W. Physiological genomics. 2016; :physiolgenomics.00099.2015. PubMed PMID: 26757797.
• The role of radiotherapy for patients over age 60 with diffuse large B-cell lymphoma in the rituximab era. Cassidy RJ, Jegadeesh N, Switchenko J, Danish H, Esiashvili N, Flowers CR, Khan MK. Leukemia & lymphoma. 2016; :1-7. PubMed PMID: 26759182.
• Gain-of-function mutations of Ptpn11 (Shp2) cause aberrant mitosis and increase susceptibility to DNA damage-induced malignancies. Liu X, Zheng H, Li X, Wang S, Meyerson HJ, Yang W, Neel BG, Qu CK. Proceedings of the National Academy of Sciences of the United States of America. 2016; PubMed PMID: 26755576.
• Arrhythmogenic Right Ventricular Cardiomyopathy/Dysplasia (ARVC/D): Review of 16 Pediatric Cases and a Proposal of Modified Pediatric Criteria. Deshpande SR, Herman HK, Quigley PC, Shinnick JK, Cundiff CA, Caltharp S, Shehata BM. Pediatric cardiology. 2016; PubMed PMID: 26743400.
• Conjunctival Stromal Tumor: Expansion of Findings in a Newly Described Entity. Auw-Haedrich C, Danielewicz KD, Mendoza PR, Reinhard T, Grossniklaus HE. Ophthalmology. 2016; PubMed PMID: 26778331.
• Outcomes following watchful waiting for stage II-IV follicular lymphoma patients in the modern era. Nastoupil LJ, Sinha R, Byrtek M, Ziemiecki R, Zhou X, Taylor M, Friedberg JW, Link BK, Cerhan JR, Dawson K, Flowers CR. British journal of haematology. 2016; PubMed PMID: 26729445.
• YB-1 is elevated in medulloblastoma and drives proliferation in Sonic hedgehog-dependent cerebellar granule neuron progenitor cells and medulloblastoma cells. Dey A, Robitaille M, Remke M, Maier C, Malhotra A, Gregorieff A, Wrana JL, Taylor MD, Angers S, Kenney AM. Oncogene. 2016; PubMed PMID: 26725322.
• Fyn-phosphorylated PIKE-A binds and inhibits AMPK signaling, blocking its tumor suppressive activity. Zhang S, Qi Q, Chan CB, Zhou W, Chen J, Luo HR, Appin C, Brat DJ, Ye K. Cell death and differentiation. 2016; 23(1):52-63. PubMed PMID: 26001218.
• Interweaving Curriculum Committees: A New Structure to Facilitate Oversight and Sustain Innovation. Stoddard HA, Brownfield ED, Churchward G, Eley JW. Academic medicine : journal of the Association of American Medical Colleges. 2016; 91(1):48-53. PubMed PMID: 26266463.
• Sonic Hedgehog Signaling Drives Mitochondrial Fragmentation by Suppressing Mitofusins in Cerebellar Granule Neuron Precursors and Medulloblastoma. Malhotra A, Dey A, Prasad N, Kenney AM. Molecular cancer research : MCR. 2016; 14(1):114-124. PubMed PMID: 26446920.
• Targeted Delivery with Imaging Assessment of siRNA Expressing Nanocassettes into Cancer. Chen W, Yang L. Methods in molecular biology (Clifton, N.J.). 2016; 1372:49-59. PubMed PMID: 26530914.
• The Role of Depression in Retention in Care for Persons Living with HIV. Zuniga JA, Yoo-Jeong M, Dai T, Guo Y, Waldrop-Valverde D. AIDS patient care and STDs. 2016; 30(1):34-38. PubMed PMID: 26544915.
• Systematic study of cis-antisense miRNAs in animal species reveals miR-3661 to target PPP2CA in human cells. Wang J, Li Z, Liu B, Chen G, Shao N, Ying X, Wang Y. RNA (New York, N.Y.). 2016; 22(1):87-95. PubMed PMID: 26577378.
• Cellular O-Glycome Reporter/Amplification to explore O-glycans of living cells. Kudelka MR, Antonopoulos A, Wang Y, Duong DM, Song X, Seyfried NT, Dell A, Haslam SM, Cummings RD, Ju T. Nature methods. 2016; 13(1):81-86. PubMed PMID: 26619014.
• Five- and 10-Year Cause-Specific Survival Rates in Carcinoma of the Minor Salivary Gland. Baddour Jr HM, Fedewa SA, Chen AY. JAMA otolaryngology-- head & neck surgery. 2016; 142(1):67-73. PubMed PMID: 26632951.
• Targeting the Janus-activated kinase-2-STAT3 signaling pathway in pancreatic cancer using the HSP90 inhibitor ganetespib. Nagaraju GP, Mezina A, Shaib WL, Landry J, El-Rayes BF. European journal of cancer (Oxford, England : 1990). 2016; 52:109-119. PubMed PMID: 26682870.
• Metabolomics and Mycobacterial Disease: Don't Forget the Bioinformatics. Collins JM, Kempker RR, Ziegler TR, Blumberg HM, Jones DP. Annals of the American Thoracic Society. 2016; 13(1):141-2. PubMed PMID: 26730872.
• 7,8-dihydroxyflavone, a small molecular TrkB agonist, is useful for treating various BDNF-implicated human disorders. Liu C, Chan CB, Ye K. Translational neurodegeneration. 2016; 5:2. PubMed PMID: 26740873.
• A nanocomposite of Au-AgI core/shell dimer as a dual-modality contrast agent for x-ray computed tomography and photoacoustic imaging. Orza A, Yang Y, Feng T, Wang X, Wu H, Li Y, Yang L, Tang X, Mao H. Medical physics. 2016; 43(1):589. PubMed PMID: 26745951.
• The Drosophila Helicase MLE Targets Hairpin Structures in Genomic Transcripts. Cugusi S, Li Y, Jin P, Lucchesi JC. PLoS genetics. 2016; 12(1):e1005761. PubMed PMID: 26752049.
• Genomic profiling of lower-grade gliomas uncovers cohesive disease groups: implications for diagnosis and treatment. Zhang CM, Brat DJ. Chinese journal of cancer. 2016; 35(1):12. PubMed PMID: 26758195.
• Farewell to GBM-O: Genomic and transcriptomic profiling of glioblastoma with oligodendroglioma component reveals distinct molecular subgroups. Hinrichs BH, Newman S, Appin CL, Dunn W, Cooper L, Pauly R, Kowalski J, Rossi MR, Brat DJ. Acta neuropathologica communications. 2016; 4(1):4. PubMed PMID: 26757882.
• A Persistent Interest in Viruses. Speck S. PLoS pathogens. 2016; 12(1):e1005327. PubMed PMID: 26766204.
• Super-Resolution Microscopy Reveals Altered Desmosomal Protein Organization in Tissue from Patients with Pemphigus Vulgaris. Stahley SN, Warren MF, Feldman RJ, Swerlick RA, Mattheyses AL, Kowalczyk AP. The Journal of investigative dermatology. 2016; 136(1):59-66. PubMed PMID: 26763424.
• Exploring the Relationships Among Level of Contact, Nature of Contact, and Mental Illness Stigma in Adolescent Girls. Greenblatt AM, Pinto MD, Higgins MK, Berg CJ. Issues in mental health nursing. 2016; 37(1):10-8. PubMed PMID: 26818928.
• Oxytocin Receptor Genetic and Epigenetic Variations: Association With Child Abuse and Adult Psychiatric Symptoms. Smearman EL, Almli LM, Conneely KN, Brody GH, Sales JM, Bradley B, Ressler KJ, Smith AK. Child development. 2016; 87(1):122-34. PubMed PMID: 26822448.