Dean Jones, PhD

Research Program

Cancer Prevention and Control
Phone Number

404-727-5970
Email Address

dpjones@emory.edu

Biography

Dean P. Jones, PhD, is a professor in the Department of Medicine (Pulmonary Division) and the Department of Biochemistry at Emory University School of Medicine in Atlanta, Georgia. Dr. Jones is a member of the Cell and Molecular Biology Research Program at Winship Cancer Institute.

Education

Dr. Jones received his PhD in Biochemistry from Oregon Health Sciences University. He then studied nutritional biochemistry at Cornell University and molecular toxicology at the Karolinska Institute as a post-doctoral fellow.

Titles & Roles

Professor, Division of Pulmonary, Allergy, Critical Care and Sleep Medicine, Department of Medicine

Emory University School of Medicine
Professor, Department of Biochemistry

Emory University School of Medicine

Research

Dr. Jones's central research focus is on redox mechanisms of oxidative stress. He currently directs the Emory Clinical Biomarkers Laboratory, which is focused on oxidative stress biomarkers and applications of 1H-NMR spectroscopy and Fourier-transform mass spectrometry for high-throughput clinical metabolomic analyses of nutritional and environmental factors in human health and disease.

Grants

View Grants

Grant Number	Title
1R01CA264519-01	Discriminatory Mechanisms in Early-Onset and Lethal Prostate Cancer
2T32GM095442-11	Critical Care Training Program
5R01CA264519-02	Discriminatory Mechanisms in Early-Onset and Lethal Prostate Cancer
5R01CA264519-03	Discriminatory Mechanisms in Early-Onset and Lethal Prostate Cancer
5R01CA264519-04	Discriminatory Mechanisms in Early-Onset and Lethal Prostate Cancer

Publications

Dr. Jones is an inductee of the MilliPub Club, which recognizes current Emory faculty who have published one or more individual papers throughout their careers that have garnered more than 1,000 citations.

Title/Journal	Authors	Publication Date
Is taurine an aging biomarker? Science (New York, N.Y.)	ME Fernandez, M Bernier, NL Price, S Camandola, MA Aon, K Vaughan, JA Mattison, JD Preston, DP Jones, T Tanaka, Q Tian, M González-Freire, L Ferrucci, R de Cabo	06/05/2025
The Microbial Metabolite δ-Valerobetaine Strengthens the Gut Epithelial Barrier. The American journal of pathology	LC Askew, CA Gacasan, ME Barbian, J Weinberg, L Luo, BS Robinson, DP Jones, CD Scharer, RM Jones	06/01/2025
Unraveling the Molecular Links between Fine Particulate Matter Exposure and Early Birth Risks in African American Mothers: A Metabolomics Study in the Atlanta African American Maternal-Child Cohort. Environmental science & technology	Z Li, AL Dunlop, JA Sarnat, A Hüls, SM Eick, A Gaskins, H Chang, A Russell, Y Tan, H Cheng, DB Barr, AK Smith, C Marsit, DP Jones, D Liang	05/29/2025
Amino Acid Associations in Healthy and Unhealthy Obesity. The Journal of nutrition	G Lim, ZR Jarrell, YM Go, DP Jones	05/27/2025
Impact of Low-Level Ergot Alkaloids and Endophyte Presence in Tall Fescue Grass on the Metabolome and Microbiome of Fall-Grazing Steers. Toxins	IM Llada, JM Lourenco, MM Dycus, JM Carpenter, ZR Jarrell, DP Jones, G Suen, NS Hill, NM Filipov	05/17/2025
A plasma metabolic signature to diagnose pulmonary tuberculosis and monitor treatment response. The Journal of infectious diseases	JM Collins, K Bobosha, N Narayanan, NR Gandhi, CL Day, J Rengarajan, RR Kempker, MSY Lau, M Nellis, N Tukvadze, NS Shah, JCM Brust, A Nizam, NA Ismail, KD Kauffman, S Sakai, DP Jones, DL Barber, TR Ziegler, JD Ernst, HM Blumberg, L Wassie	05/08/2025
Cadmium exposure following early-life respiratory syncytial virus infection promotes lung fibrosis through autophagy inhibition. Toxicological sciences : an official journal of the Society of Toxicology	ZR Jarrell, CM Lee, HY Lee, KH Kim, G Lim, M Orr, SM Kang, Y Chen, DP Jones, YM Go	04/23/2025
Dysregulated maternal and newborn fatty acid, sugar and amino acid metabolism associated with high birth weight. International journal of obesity (2005)	C Qiu, J Liao, R Gheissari, C Li, A Kapai, DV Conti, DP Jones, TM Bastain, CV Breton, Z Chen	04/17/2025
Impact of prenatal phthalate exposure on newborn metabolome and infant neurodevelopment. Nature communications	SS Hoffman, Z Tang, A Dunlop, PA Brennan, T Huynh, SM Eick, DB Barr, B Rushing, SL McRitchie, S Sumner, KR Taibl, Y Tan, P Panuwet, GE Lee, J Eatman, EJ Corwin, PB Ryan, DP Jones, D Liang	04/02/2025
Longitudinal Associations of PFAS Exposure With Insulin Sensitivity and β-Cell Function Among Hispanic Women With a History of Gestational Diabetes Mellitus. Diabetes care	N Kang, W Chen, N Osazuwa, C Qiu, JC Botelho, AM Calafat, D Jones, T Buchanan, AH Xiang, Z Chen	04/01/2025
Environmental basis for early onset breast cancer. Reproductive toxicology (Elmsford, N.Y.)	S Teeny, ZR Jarrell, NY Krigbaum, PM Cirillo, YM Go, BA Cohn, DP Jones	04/01/2025
Maternal metabolomics linking prenatal exposure to fine particulate matter and birth weight: a cross-sectional analysis of the MADRES cohort. Environmental health : a global access science source	W Chen, C Qiu, J Hao, J Liao, F Lurmann, N Pavlovic, R Habre, DP Jones, TM Bastain, CV Breton, Z Chen	03/29/2025
Oxidative gaseous air pollutant exposure interacts with PNPLA3-I148M genotype to influence liver fat fraction and multi-omics profiles in young adults. Environmental pollution (Barking, Essex : 1987)	WB Patterson, ND Young, EA Holzhausen, F Lurmann, D Liang, DI Walker, DP Jones, J Liao, Z Chen, DV Conti, L Chatzi, JA Goodrich, TL Alderete	03/01/2025
An untargeted metabolome-wide association study of maternal perinatal tobacco smoking in newborn blood spots. Metabolomics : Official journal of the Metabolomic Society	D He, Q Yan, K Uppal, DI Walker, DP Jones, B Ritz, JE Heck	02/20/2025
Metabolic Mechanisms Underlying the Association Between the Profertility Diet and In Vitro Fertilization End Points. The Journal of nutrition	RB Hood, D Liang, Y Wang, Y Tan, I Souter, DP Jones, R Hauser, JE Chavarro, AJ Gaskins	02/01/2025
Global metabolomic alterations associated with endocrine-disrupting chemicals among pregnant individuals and newborns. Metabolomics : Official journal of the Metabolomic Society	J Puvvula, LC Song, KJ Zalewska, A Alexander, KE Manz, JM Braun, KD Pennell, EA DeFranco, SM Ho, YK Leung, S Huang, AM Vuong, SS Kim, Z Percy, P Bhashyam, R Lee, DP Jones, V Tran, DV Kim, AM Calafat, JC Botelho, A Chen	01/25/2025
Introducing "Identification Probability" for Automated and Transferable Assessment of Metabolite Identification Confidence in Metabolomics and Related Studies. Analytical chemistry	TO Metz, CH Chang, V Gautam, A Anjum, S Tian, F Wang, SM Colby, JR Nunez, MR Blumer, AS Edison, O Fiehn, DP Jones, S Li, ET Morgan, GJ Patti, DH Ross, MR Shapiro, AJ Williams, DS Wishart	01/14/2025
Untargeted metabolomics of 3xTg-AD neurotoxic astrocytes. Journal of proteomics	D Carvalho, P Diaz-Amarilla, MR Smith, MD Santi, M Martinez-Busi, YM Go, DP Jones, P Duarte, E Savio, JA Abin-Carriquiry, F Arredondo	01/06/2025
Rodin: a streamlined metabolomics data analysis and visualization tool. Bioinformatics advances	B Minasenko, D Wang, P Cirillo, N Krigbaum, B Cohn, DP Jones, JM Collins, X Hu	01/01/2025
Metabolic Pathways Associated With Obesity and Hypertension in Black Caregivers of Persons Living With Dementia. Nursing research	GS Brewster, MC Houser, I Yang, J Pelkmans, M Higgins, C Tower-Gilchrist, J Wells, AA Quyyumi, D Jones, S B Dunbar, N Carlson	01/01/2025
Mammalian hydroxylation of microbiome-derived obesogen, delta-valerobetaine, to homocarnitine, a 5-carbon carnitine analog. The Journal of biological chemistry	J Weinberg, KH Liu, CM Lee, WJ Crandall, AR Cuevas, SA Druzak, ET Morgan, ZR Jarrell, EA Ortlund, GS Martin, G Singer, FH Strobel, YM Go, DP Jones	01/01/2025
Mechanistic role for mTORC1 signaling in profibrotic toxicity of low-dose cadmium. Toxicology and applied pharmacology	CM Lee, HY Lee, ZR Jarrell, MR Smith, DP Jones, YM Go	01/01/2025
Development of a metabolomic risk score for exposure to traffic-related air pollution: A multi-cohort study. Environmental research	SS Hoffman, AN Lane, AJ Gaskins, S Ebelt, T Tug, V Tran, DP Jones, D Liang, A Hüls	12/15/2024
Basic Science and Pathogenesis. Alzheimer's & dementia : the journal of the Alzheimer's Association	I Mhatre-Winters, A Eid, JJ Zhan, RP Hart, AJ Barahona, V Tran, Y Han, YM Go, DP Jones, JR Richardson	12/01/2024
Public Health. Alzheimer's & dementia : the journal of the Alzheimer's Association	JR Richardson, I Mhatre-Winters, P Cirillo, N Krigbaum, P Factor-Litvak, YM Go, DP Jones, B Cohn	12/01/2024
A pilot metabolomics study across the continuum of interstitial lung disease fibrosis severity. Physiological reports	J Zhan, ZR Jarrell, X Hu, J Weinberg, M Orr, L Marts, DP Jones, YM Go	10/01/2024
Pyrimidine Biosynthesis in Branching Morphogenesis Defects Induced by Prenatal Heavy Metal Exposure. American journal of respiratory cell and molecular biology	C Wongtrakool, J Ma, ZR Jarrell, KH Liu, M Orr, V Tran, TW Gauthier, CJ Marsit, DP Jones, YM Go, X Hu	09/01/2024
Prenatal and Early Life Exposure to Ambient Air Pollutants Is Associated with the Fecal Metabolome in the First Two Years of Life. Environmental science & technology	EA Holzhausen, BN Chalifour, Y Tan, N Young, F Lurmann, DP Jones, JA Sarnat, HH Chang, MI Goran, D Liang, TL Alderete	08/13/2024
A nested case-control study of untargeted plasma metabolomics and lung cancer among never-smoking women within the prospective Shanghai Women's Health Study. International journal of cancer	ML Rahman, XO Shu, DP Jones, W Hu, BT Ji, B Blechter, JYY Wong, Q Cai, G Yang, YT Gao, W Zheng, N Rothman, D Walker, Q Lan	08/01/2024
The redox code of plants. Plant, cell & environment	R Mittler, DP Jones	08/01/2024
Introducing 'identification probability' for automated and transferable assessment of metabolite identification confidence in metabolomics and related studies. bioRxiv : the preprint server for biology	TO Metz, CH Chang, V Gautam, A Anjum, S Tian, F Wang, SM Colby, JR Nunez, MR Blumer, AS Edison, O Fiehn, DP Jones, S Li, ET Morgan, GJ Patti, DH Ross, MR Shapiro, AJ Williams, DS Wishart	07/31/2024
High-resolution plasma metabolomics and thiamine status in critically Ill adult patients. Metabolomics : Official journal of the Metabolomic Society	K Gundogan, MM Nellis, NT Ozer, SS Ergul, GG Sahin, S Temel, RC Yuksel, S Teeny, JA Alvarez, M Sungur, DP Jones, TR Ziegler	07/27/2024
High-Resolution Mass Spectrometry for Human Exposomics: Expanding Chemical Space Coverage. Environmental science & technology	Y Lai, JP Koelmel, DI Walker, EJ Price, S Papazian, KE Manz, D Castilla-Fernández, JA Bowden, V Nikiforov, A David, V Bessonneau, B Amer, S Seethapathy, X Hu, EZ Lin, A Jbebli, BR McNeil, D Barupal, M Cerasa, H Xie, V Kalia, R Nandakumar, R Singh, Z Tian, P Gao, Y Zhao, J Froment, P Rostkowski, S Dubey, K Coufalíková, H Seličová, H Hecht, S Liu, HH Udhani, S Restituito, KM Tchou-Wong, K Lu, JW Martin, B Warth, KJ Godri Pollitt, J Klánová, O Fiehn, TO Metz, KD Pennell, DP Jones, GW Miller	07/23/2024
The associations between pre-conception urinary phthalate concentrations, the serum metabolome, and live birth among women undergoing assisted reproduction. Environmental research	RB Hood, J Nelson, L Minguez-Alarcon, JB Ford, R Hauser, D Jones, D Liang, AJ Gaskins	07/01/2024
Repeated exposure to eucalyptus wood smoke alters pulmonary gene and metabolic profiles in male Long-Evans rats. Toxicological sciences : an official journal of the Society of Toxicology	SJ Cochran, K Dunigan-Russell, GM Hutton, H Nguyen, MC Schladweiler, DP Jones, WC Williams, AA Fisher, MI Gilmour, JA Dye, MR Smith, CN Miller, KM Gowdy	05/28/2024
Untargeted serum metabolic profiling of diabetes mellitus among Parkinson's disease patients. NPJ Parkinson's disease	S Li, Y Lin, D Jones, DI Walker, A Duarte Folle, I Del Rosario, Y Yu, K Zhang, AM Keener, J Bronstein, B Ritz, KC Paul	05/10/2024
Redox organization of living systems. Free radical biology & medicine	DP Jones	05/01/2024
Metabolic alterations and mitochondrial dysfunction in human airway BEAS-2B cells exposed to vanadium pentoxide. Toxicology	X He, MR Smith, ZR Jarrell, V Thi Ly, Y Liang, CM Lee, M Orr, YM Go, DP Jones	05/01/2024
High-Resolution Plasma Metabolomics Identifies Alterations in Fatty Acid, Energy, and Micronutrient Metabolism in Adults Across the Leprosy Spectrum. The Journal of infectious diseases	JK Fairley, JA Ferreira, LAO Fraga, S Lyon, TM Valadão Cardoso, VC Boson, AC Madureira Nunes, EH Medeiros Cinha, LBP de Oliveira, EB Magueta Silva, PHF Marçal, AC Branco, MAF Grossi, DP Jones, TR Ziegler, JM Collins	04/12/2024
Exposure to per- and polyfluoroalkyl substances and high-throughput proteomics in Hispanic youth. Environment international	JC Chen, JA Goodrich, DI Walker, J Liao, E Costello, TL Alderete, D Valvi, H Hampson, S Li, BO Baumert, S Rock, DP Jones, SP Eckel, R McConnell, FD Gilliland, MT Aung, DV Conti, Z Chen, L Chatzi	04/01/2024
Associations of dietary intake and longitudinal measures of per- and polyfluoroalkyl substances (PFAS) in predominantly Hispanic young Adults: A multicohort study. Environment international	HE Hampson, E Costello, DI Walker, H Wang, BO Baumert, D Valvi, S Rock, DP Jones, MI Goran, FD Gilliland, DV Conti, TL Alderete, Z Chen, L Chatzi, JA Goodrich	03/01/2024
Exposure to perfluoroalkyl substances and longitudinal changes in bone mineral density in adolescents and young adults: A multi-cohort study. Environmental research	E Beglarian, E Costello, DI Walker, H Wang, TL Alderete, Z Chen, D Valvi, BO Baumert, S Rock, B Rubbo, MT Aung, FD Gilliland, MI Goran, DP Jones, R McConnell, SP Eckel, DV Conti, JA Goodrich, L Chatzi	03/01/2024
A prediction model for classifying maternal pregnancy smoking using California state birth certificate information. Paediatric and perinatal epidemiology	D He, X Huang, OA Arah, DI Walker, DP Jones, B Ritz, JE Heck	02/01/2024
Linoleic acid blunts early osteoblast differentiation and impairs oxidative phosphorylation in vitro. Prostaglandins, leukotrienes, and essential fatty acids	PC Nesbeth, TR Ziegler, AK Tripathi, S Dabeer, D Weiss, L Hao, MR Smith, DP Jones, KM Maner-Smith, CL Tu, W Chang, MN Weitzmann, JA Alvarez	02/01/2024
Metabolomic Effects of Folic Acid Supplementation in Adults: Evidence from the FACT Trial. The Journal of nutrition	I Martinez-Morata, H Wu, M Galvez-Fernandez, V Ilievski, T Bottiglieri, MM Niedzwiecki, J Goldsmith, DP Jones, MA Kioumourtzoglou, B Pierce, DI Walker, MV Gamble	02/01/2024
Protein S-palmitoylation enhances profibrotic signaling in response to cadmium. Toxicology and applied pharmacology	CM Lee, ZR Jarrell, HY Lee, G Singer, VT Tran, M Orr, DP Jones, YM Go	02/01/2024
Metabolomic signatures of ideal cardiovascular health in black adults. Scientific reports	SJ Islam, C Liu, AN Mohandas, K Rooney, A Nayak, A Mehta, YA Ko, JH Kim, YV Sun, SB Dunbar, TT Lewis, HA Taylor, K Uppal, DP Jones, AA Quyyumi, CD Searles	01/20/2024
Dioxin(-like)-Related Biological Effects through Integrated Chemical-wide and Metabolome-wide Analyses. Environmental science & technology	Y Zhao, J Meijer, DI Walker, J Kim, L Portengen, DP Jones, F Saberi Hosnijeh, J Vlaanderen, R Vermeulen	01/09/2024
Postprandial Metabolite Profiles and Risk of Prediabetes in Young People: A Longitudinal Multicohort Study. Diabetes care	JA Goodrich, H Wang, DI Walker, X Lin, X Hu, TL Alderete, Z Chen, D Valvi, BO Baumert, S Rock, K Berhane, FD Gilliland, MI Goran, DP Jones, DV Conti, L Chatzi	01/01/2024
Neonatal per- and polyfluoroalkyl substance exposure in relation to retinoblastoma. Environmental research	Y Chen, KC Paul, DI Walker, DP Jones, X Wang, BR Ritz, JE Heck	01/01/2024
Ruminal ergovaline and volatile fatty acid dynamics: Association with poor performance and a key growth regulator in steers grazing toxic tall fescue. Environmental toxicology and pharmacology	IM Llada, RS Mote, NS Hill, JM Lourenco, DP Jones, G Suen, MK Ross, NM Filipov	01/01/2024
Combined cerebrospinal fluid metabolomic and cytokine profiling in tuberculosis meningitis reveals robust and prolonged changes in immunometabolic networks. Tuberculosis (Edinburgh, Scotland)	J Tomalka, A Sharma, AGC Smith, T Avaliani, M Gujabidze, T Bakuradze, S Sabanadze, DP Jones, Z Avaliani, M Kipiani, RR Kempker, JM Collins	01/01/2024
Untargeted serum metabolomics reveals novel metabolite associations and disruptions in amino acid and lipid metabolism in Parkinson's disease. Molecular neurodegeneration	KC Paul, K Zhang, DI Walker, J Sinsheimer, Y Yu, C Kusters, I Del Rosario, AD Folle, AM Keener, J Bronstein, DP Jones, B Ritz	12/19/2023
Maternal and newborn metabolomic changes associated with urinary polycyclic aromatic hydrocarbon metabolite concentrations at delivery: an untargeted approach. Metabolomics : Official journal of the Metabolomic Society	J Puvvula, KE Manz, JM Braun, KD Pennell, EA DeFranco, SM Ho, YK Leung, S Huang, AM Vuong, SS Kim, ZP Percy, P Bhashyam, R Lee, DP Jones, V Tran, DV Kim, A Chen	12/14/2023
The neonatal blood spot metabolome in retinoblastoma. EJC paediatric oncology	Q Yan, D He, DI Walker, K Uppal, X Wang, HT Orimoloye, DP Jones, BR Ritz, JE Heck	12/01/2023
Characterizing substrate utilization during the fasted state using plasma high-resolution metabolomics. Nutrition (Burbank, Los Angeles County, Calif.)	KR Taibl, MP Bellissimo, MR Smith, KH Liu, VT Tran, DP Jones, TR Ziegler, JA Alvarez	12/01/2023
High-Resolution Plasma Metabolomics and Thiamine Status in Critically Ill Adult Patients. Research square	K Gundogan, MM Nellis, NT Ozer, SS Ergul, GG Sahin, S Temel, RC Yuksel, S Teeny, JA Alvarez, M Sungur, DP Jones, TR Ziegler	11/15/2023
AMPK activator-treated human cardiac spheres enhance maturation and enable pathological modeling. Stem cell research & therapy	D Li, LC Armand, F Sun, H Hwang, D Wolfson, A Rampoldi, R Liu, P Forghani, X Hu, WM Yu, CK Qu, DP Jones, R Wu, HC Cho, JT Maxwell, C Xu	11/08/2023
Metabolic reprograming and increased inflammation by cadmium exposure following early-life respiratory syncytial virus infection-the involvement of protein S-palmitoylation. Toxicological sciences : an official journal of the Society of Toxicology	ZR Jarrell, CM Lee, KH Kim, X He, MR Smith, JR Raha, N Bhatnagasr, M Orr, SM Kang, Y Chen, DP Jones, YM Go	11/06/2023
Serum and follicular fluid metabolome and markers of ovarian stimulation. Human reproduction (Oxford, England)	RB Hood, D Liang, Y Tan, JB Ford, I Souter, JE Chavarro, DP Jones, R Hauser, AJ Gaskins	11/02/2023
Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement. Science translational medicine	MH Woodworth, RE Conrad, M Haldopoulos, SM Pouch, A Babiker, AK Mehta, KL Sitchenko, CH Wang, A Strudwick, JM Ingersoll, C Philippe, S Lohsen, K Kocaman, BG Lindner, JK Hatt, RM Jones, C Miller, AS Neish, R Friedman-Moraco, G Karadkhele, KH Liu, DP Jones, CC Mehta, TR Ziegler, DS Weiss, CP Larsen, KT Konstantinidis, CS Kraft	11/01/2023
Metabolic Perturbations Associated with an Exposure Mixture of Per- and Polyfluoroalkyl Substances in the Atlanta African American Maternal-Child Cohort. Environmental science & technology	D Liang, KR Taibl, AL Dunlop, DB Barr, PB Ryan, T Everson, A Huels, Y Tan, P Panuwet, K Kannan, C Marsit, DP Jones, SM Eick	10/31/2023
Metabolite Stability in Archived Neonatal Dried Blood Spots Used for Epidemiologic Research. American journal of epidemiology	D He, Q Yan, K Uppal, DI Walker, DP Jones, B Ritz, JE Heck	10/10/2023
In-utero exposure to antibiotics and risk of colorectal cancer in a prospective cohort of 18 000 adult offspring. International journal of epidemiology	CC Murphy, PM Cirillo, NY Krigbaum, AG Singal, DP Jones, T Zaki, BA Cohn	10/05/2023
The impact of heat exposures on biomarkers of AKI and plasma metabolome among agricultural and non-agricultural workers. Environment international	RC Chicas, Y Wang, E Jennifer Weil, L Elon, N Xiuhtecutli, M C Houser, DP Jones, J M Sands, V Hertzberg, L McCauley, D Liang	10/01/2023
Assessing Metabolic Differences Associated with Exposure to Polybrominated Biphenyl and Polychlorinated Biphenyls in the Michigan PBB Registry. Environmental health perspectives	SS Hoffman, D Liang, RB Hood, Y Tan, ML Terrell, ME Marder, H Barton, MA Pearson, DI Walker, DB Barr, DP Jones, M Marcus	10/01/2023
PFAS Exposures and the Human Metabolome: A Systematic Review of Epidemiological Studies. Current pollution reports	S India-Aldana, M Yao, V Midya, E Colicino, L Chatzi, J Chu, C Gennings, DP Jones, RJF Loos, VW Setiawan, MR Smith, RW Walker, D Barupal, DI Walker, D Valvi	09/01/2023
Association between Neuroligin-1 polymorphism and plasma glutamine levels in individuals with autism spectrum disorder. EBioMedicine	IH Lee, DI Walker, Y Lin, MR Smith, KD Mandl, DP Jones, SW Kong	09/01/2023
Discovery of phytochelatins in human urine: Evidence for function in selenium disposition and protection against cadmium. FASEB bioAdvances	ZR Jarrell, KH Liu, KK Dennis, X Hu, GS Martin, DP Jones, YM Go	09/01/2023
Substrate-dependent metabolomic signatures of myeloperoxidase activity in airway epithelial cells: Implications for early cystic fibrosis lung disease. Free radical biology & medicine	SO Kim, JP Shapiro, KA Cottrill, GL Collins, S Shanthikumar, P Rao, S Ranganathan, SM Stick, ML Orr, AM Fitzpatrick, YM Go, DP Jones, RM Tirouvanziam, JD Chandler	09/01/2023
Third Trimester Serum Amino Acid Metabolism is Associated with Maternal Breast Cancer Diagnosed within 15 years of Pregnancy. Research square	S Teeny, ZR Jarrell, NY Krigbaum, PM Cirillo, YM Go, BA Cohn, DP Jones	08/23/2023
Low-dose vanadium pentoxide perturbed lung metabolism associated with inflammation and fibrosis signaling in male animal and in vitro models. American journal of physiology. Lung cellular and molecular physiology	X He, ZR Jarrell, MR Smith, VT Ly, X Hu, V Sueblinvong, Y Liang, M Orr, YM Go, DP Jones	08/01/2023
Exposome epidemiology for suspect environmental chemical exposures during pregnancy linked to subsequent breast cancer diagnosis. Environment international	YM Go, J Weinberg, S Teeny, PM Cirillo, NY Krigbaum, G Singer, V Tran, BA Cohn, DP Jones	08/01/2023
Metabolic pathways altered by air pollutant exposure in association with lipid profiles in young adults. Environmental pollution (Barking, Essex : 1987)	J Liao, J Goodrich, DI Walker, Y Lin, F Lurmann, C Qiu, DP Jones, F Gilliland, L Chazi, Z Chen	06/15/2023
Unsupervised Hierarchical Clustering of Head and Neck Cancer Patients by Pre-Treatment Plasma Metabolomics Creates Prognostic Metabolic Subtypes. Cancers	RC Eldridge, ZS Qin, NF Saba, MC Houser, DN Hayes, AH Miller, DW Bruner, DP Jones, C Xiao	06/14/2023
Newborn metabolomic signatures of maternal per- and polyfluoroalkyl substance exposure and reduced length of gestation. Nature communications	KR Taibl, AL Dunlop, DB Barr, YY Li, SM Eick, K Kannan, PB Ryan, M Schroder, B Rushing, T Fennell, CJ Chang, Y Tan, CJ Marsit, DP Jones, D Liang	05/30/2023
A State-of-the-Science Review on High-Resolution Metabolomics Application in Air Pollution Health Research: Current Progress, Analytical Challenges, and Recommendations for Future Direction. Environmental health perspectives	D Liang, Z Li, J Vlaanderen, Z Tang, DP Jones, R Vermeulen, JA Sarnat	05/01/2023
Increased adiposity is associated with altered skeletal muscle energetics. Journal of applied physiology (Bethesda, Md. : 1985)	DA Reiter, MP Bellissimo, L Zhou, S Boebinger, GD Wells, DP Jones, TR Ziegler, JA Alvarez, CC Fleischer	05/01/2023
Pregnancy-related hemodynamic biomarkers in relation to trimester-specific maternal per - and polyfluoroalkyl substances exposures and adverse birth outcomes. Environmental pollution (Barking, Essex : 1987)	KR Taibl, D Liang, AL Dunlop, DB Barr, MR Smith, K Steenland, Y Tan, PB Ryan, P Panuwet, T Everson, CJ Marsit, K Kannan, DP Jones, SM Eick	04/15/2023
Study on the relationship between selenium and cadmium in diseased human lungs. Advances in redox research	MR Smith, X Hu, ZR Jarrell, X He, M Orr, J Fernandes, JD Chandler, DI Walker, A Esper, L Marts, DC Neujahr, DP Jones, YM Go	04/01/2023
Chronic ethanol exposure induces mitochondrial dysfunction and alters gene expression and metabolism in human cardiac spheroids. Alcohol, clinical & experimental research	H Hwang, R Liu, R Eldridge, X Hu, P Forghani, DP Jones, C Xu	04/01/2023
Metabolomic changes associated with chronic arsenic exposure in a Bangladeshi population. Chemosphere	H Wu, V Kalia, MM Niedzwiecki, MA Kioumourtzoglou, B Pierce, V Ilievski, J Goldsmith, DP Jones, A Navas-Acien, DI Walker, MV Gamble	04/01/2023
Antagonistic Interactions in Mitochondria ROS Signaling Responses to Manganese. Antioxidants (Basel, Switzerland)	J Fernandes, K Uppal, KH Liu, X Hu, M Orr, V Tran, YM Go, DP Jones	03/25/2023
Metabolome × Microbiome Changes Associated with a Diet-Induced Reduction in Hepatic Fat among Adolescent Boys. Metabolites	CC Cohen, H Huneault, CJ Accardi, DP Jones, K Liu, KM Maner-Smith, M Song, JA Welsh, PA Ugalde-Nicalo, JB Schwimmer, MB Vos	03/08/2023
Untargeted, High-Resolution Metabolomics in Pediatric Eosinophilic Esophagitis. Journal of pediatric gastroenterology and nutrition	EM Sinclair, CC Cohen, V Tran, DP Jones, JA Alvarez, R Kamaleswaran, MG Rad, PG Kruszewski, MB Vos	03/01/2023
BIOMARKERS OF MATERNAL SMOKING AND THE RISK OF RETINOBLASTOMA IN OFFSPRING. Retina (Philadelphia, Pa.)	D He, X Huang, K Uppal, AL Coleman, DD Walker, B Ritz, DP Jones, JE Heck	03/01/2023
PISTACHIo (PreemptIon of diSrupTive behAvior in CHIldren): real-time monitoring of sleep and behavior of children 3-7 years old receiving parent-child interaction therapy augment with artificial intelligence - the study protocol, pilot study. Pilot and feasibility studies	M Saliba, N Drapeau, M Skime, X Hu, CJ Accardi, AP Athreya, J Kolacz, J Shekunov, DP Jones, PE Croarkin, M Romanowicz	02/09/2023
Longitudinal profiles of the fecal metabolome during the first 2 years of life. Scientific reports	EA Holzhausen, N Shen, B Chalifour, V Tran, Z Li, JA Sarnat, HH Chang, DP Jones, MI Goran, D Liang, TL Alderete	02/02/2023
Metabolic Signatures of Youth Exposure to Mixtures of Per- and Polyfluoroalkyl Substances: A Multi-Cohort Study. Environmental health perspectives	JA Goodrich, DI Walker, J He, X Lin, BO Baumert, X Hu, TL Alderete, Z Chen, D Valvi, ZC Fuentes, S Rock, H Wang, K Berhane, FD Gilliland, MI Goran, DP Jones, DV Conti, L Chatzi	02/01/2023
Environmental Chemicals and their Association with Hyperparathyroidism. World journal of surgery	JL McMullin, J Codner, SG Patel, J Sharma, X Hu, DP Jones, CJ Weber, ND Saunders	02/01/2023
Metabolomics of V₂O₅ nanoparticles and V₂O₅ nanofibers in human airway epithelial BEAS-2B cells. Toxicology and applied pharmacology	X He, ZR Jarrell, MR Smith, VT Ly, Y Liang, M Orr, YM Go, DP Jones	01/15/2023
Environmental chemicals and endogenous metabolites in bile of USA and Norway patients with primary sclerosing cholangitis. Exposome	CW Grant, BD Juran, AH Ali, EM Schlicht, JK Bianchi, X Hu, Y Liang, Z Jarrell, KH Liu, YM Go, DP Jones, DI Walker, GW Miller, T Folseraas, TH Karlsen, NF LaRusso, GJ Gores, AP Athreya, KN Lazaridis	01/01/2023
Linking Air Pollution Exposure to Blood-Based Metabolic Features in a Community-Based Aging Cohort with and without Dementia. Journal of Alzheimer's disease : JAD	V Kalia, ER Kulick, B Vardarajan, Y Gu, JJ Manly, MSV Elkind, JD Kaufman, DP Jones, AA Baccarelli, R Mayeux, MA Kioumourtzoglou, GW Miller	01/01/2023
The potential role of early life feeding patterns in shaping the infant fecal metabolome: implications for neurodevelopmental outcomes. npj metabolic health and disease	B Chalifour, EA Holzhausen, JJ Lim, EN Yeo, N Shen, DP Jones, BS Peterson, MI Goran, D Liang, TL Alderete	01/01/2023
Metallomics in pulmonary arterial hypertension patients. Pulmonary circulation	K El-Kersh, CD Hopkins, X Wu, SN Rai, MC Cave, MR Smith, YM Go, DP Jones, L Cai, J Huang	01/01/2023
Neutrophil trafficking to the site of infection requires Cpt1a-dependent fatty acid β-oxidation. Communications biology	L Pham, P Komalavilas, AM Eddie, TE Thayer, DL Greenwood, KH Liu, J Weinberg, A Patterson, JP Fessel, KL Boyd, JC Schafer, JL Kuck, AC Shaver, DK Flaherty, BK Matlock, CDM Wijers, CH Serezani, DP Jones, EL Brittain, JC Rathmell, MJ Noto	12/13/2022
Comprehensive characterization of putative genetic influences on plasma metabolome in a pediatric cohort. Human genomics	IH Lee, MR Smith, A Yazdani, S Sandhu, DI Walker, KD Mandl, DP Jones, SW Kong	12/08/2022
MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques. Scientific data	JD DeBarry, MV Nural, SB Pakala, V Nayak, S Warrenfeltz, J Humphrey, SA Lapp, M Cabrera-Mora, CFA Brito, J Jiang, CL Saney, A Hankus, HM Stealey, MB DeBarry, N Lackman, N Legall, K Lee, Y Tang, A Gupta, ED Trippe, RR Bridger, DB Weatherly, MS Peterson, X Jiang, V Tran, K Uppal, LL Fonseca, CJ Joyner, E Karpuzoglu, RJ Cordy, EVS Meyer, LL Wells, DS Ory, FE Lee, R Tirouvanziam, JB Gutiérrez, C Ibegbu, TJ Lamb, J Pohl, ST Pruett, DP Jones, MP Styczynski, EO Voit, A Moreno, MR Galinski, JC Kissinger	11/24/2022
Metabolomics profiling in acute liver transplant rejection in a pediatric population. Scientific reports	JK Frediani, YS Beyh, N Gupta, AL Westbrook, R Cleeton, M Cordero, A Hernandez, V Tran, DP Jones, MB Vos	11/04/2022
Use of high-resolution metabolomics to assess the biological perturbations associated with maternal exposure to Bisphenol A and Bisphenol F among pregnant African American women. Environment international	R Tchen, Y Tan, D Boyd Barr, P Barry Ryan, V Tran, Z Li, YJ Hu, AK Smith, DP Jones, AL Dunlop, D Liang	11/01/2022
Using follicular fluid metabolomics to investigate the association between air pollution and oocyte quality. Environment international	S Hwang, RB Hood, R Hauser, J Schwartz, F Laden, D Jones, D Liang, AJ Gaskins	11/01/2022
Characterizing the follicular fluid metabolome: quantifying the correlation across follicles and differences with the serum metabolome. Fertility and sterility	RB Hood, D Liang, Y Tan, J Ford, I Souter, DP Jones, R Hauser, AJ Gaskins	11/01/2022
Metabolic Alterations Differentiating Cardiovascular Maladaptation from Athletic Training in American-Style Football Athletes. Medicine and science in sports and exercise	JV Tso, C Liu, CG Turner, K Uppal, G Prabakaran, K Ejaz, AL Baggish, DP Jones, AA Quyyumi, JH Kim	10/01/2022
Transcriptomic-Metabolomic Profiling in Mouse Lung Tissues Reveals Sex- and Strain-Based Differences. Metabolites	J Fernandes, K Dunigan-Russell, H Zhong, V Lin, M Silverberg, SB Moore, V Tran, DP Jones, PF Vitiello, LK Rogers, TE Tipple	09/30/2022
High-Throughput Production of Diverse Xenobiotic Metabolites with Cytochrome P450-Transduced Huh7 Hepatoma Cell Lines. Drug metabolism and disposition: the biological fate of chemicals	CM Lee, KH Liu, G Singer, GW Miller, S Li, DP Jones, ET Morgan	09/01/2022
Plasma concentrations of lipophilic persistent organic pollutants and glucose homeostasis in youth populations. Environmental research	BO Baumert, JA Goodrich, X Hu, DI Walker, TL Alderete, Z Chen, D Valvi, S Rock, K Berhane, FD Gilliland, MI Goran, DP Jones, DV Conti, L Chatzi	09/01/2022
Vanadium pentoxide induced oxidative stress and cellular senescence in human lung fibroblasts. Redox biology	X He, ZR Jarrell, Y Liang, M Ryan Smith, ML Orr, L Marts, YM Go, DP Jones	09/01/2022
Community Health Worker Activities in Public Health Programs to Prevent Violence: Coding Roles and Scope. American journal of public health	C Barbero, A Hafeedh Bin Abdullah, N Wiggins, M Garrettson, D Jones, A S Guinn, C Girod, J Bradford, A Wennerstrom	08/01/2022
Plasma Metabolomics Analysis of Aspirin Treatment and Risk of Colorectal Adenomas. Cancer prevention research (Philadelphia, Pa.)	EL Barry, V Fedirko, Y Jin, K Liu, LA Mott, JL Peacock, MN Passarelli, JA Baron, DP Jones	08/01/2022
Crosstalk between Host Genome and Metabolome among People with HIV in South Africa. Metabolites	C Liu, Z Wang, Q Hui, Y Chiang, J Chen, J Brijkumar, JA Edwards, CE Ordonez, MR Dudgeon, H Sunpath, S Pillay, P Moodley, DR Kuritzkes, MYS Moosa, DP Jones, VC Marconi, YV Sun	07/06/2022
Defining roles of specific reactive oxygen species (ROS) in cell biology and physiology. Nature reviews. Molecular cell biology	H Sies, VV Belousov, NS Chandel, MJ Davies, DP Jones, GE Mann, MP Murphy, M Yamamoto, C Winterbourn	07/01/2022
Low-Dose Cadmium Potentiates Metabolic Reprogramming Following Early-Life Respiratory Syncytial Virus Infection. Toxicological sciences : an official journal of the Society of Toxicology	ZR Jarrell, MR Smith, KH Kim, Y Lee, X Hu, X He, M Orr, Y Chen, SM Kang, DP Jones, YM Go	06/28/2022
The Oxidative Potential of Fine Particulate Matter and Biological Perturbations in Human Plasma and Saliva Metabolome. Environmental science & technology	Z Tang, JA Sarnat, RJ Weber, AG Russell, X Zhang, Z Li, T Yu, DP Jones, D Liang	06/07/2022
Sex differences in the relationships between body composition, fat distribution, and mitochondrial energy metabolism: a pilot study. Nutrition & metabolism	MP Bellissimo, CC Fleischer, DA Reiter, AM Goss, L Zhou, MR Smith, J Kohlmeier, R Tirouvanziam, PH Tran, L Hao, BH Crain, GD Wells, DP Jones, TR Ziegler, JA Alvarez	05/21/2022
Evaluation of the Use of Saliva Metabolome as a Surrogate of Blood Metabolome in Assessing Internal Exposures to Traffic-Related Air Pollution. Environmental science & technology	Z Li, JA Sarnat, KH Liu, RB Hood, CJ Chang, X Hu, V Tran, R Greenwald, HH Chang, A Russell, T Yu, DP Jones, D Liang	05/17/2022
Gut-derived bacterial toxins impair memory CD4+ T cell mitochondrial function in HIV-1 infection. The Journal of clinical investigation	B Ferrari, AC Da Silva, KH Liu, EV Saidakova, LB Korolevskaya, KV Shmagel, C Shive, G Pacheco Sanchez, M Retuerto, AA Sharma, K Ghneim, L Noel-Romas, B Rodriguez, MA Ghannoum, PP Hunt, SG Deeks, AD Burgener, DP Jones, MA Dobre, VC Marconi, RP Sekaly, SA Younes	05/02/2022
High-Resolution Exposomics and Metabolomics Reveals Specific Associations in Cholestatic Liver Diseases. Hepatology communications	DI Walker, BD Juran, AC Cheung, EM Schlicht, Y Liang, M Niedzwiecki, NF LaRusso, GJ Gores, DP Jones, GW Miller, KN Lazaridis	05/01/2022
Cross-species metabolomic analysis of tau- and DDT-related toxicity. PNAS nexus	V Kalia, MM Niedzwiecki, JM Bradner, FK Lau, FL Anderson, ML Bucher, KE Manz, AP Schlotter, ZC Fuentes, KD Pennell, M Picard, DI Walker, WT Hu, DP Jones, GW Miller	05/01/2022
Assessment of metabolic perturbations associated with exposure to phthalates among pregnant African American women. The Science of the total environment	X Zhang, DB Barr, AL Dunlop, P Panuwet, JA Sarnat, GE Lee, Y Tan, EJ Corwin, DP Jones, PB Ryan, D Liang	04/20/2022
Non-targeted metabolomics and associations with per- and polyfluoroalkyl substances (PFAS) exposure in humans: A scoping review. Environment international	P Guo, T Furnary, V Vasiliou, Q Yan, K Nyhan, DP Jones, CH Johnson, Z Liew	04/01/2022
Integrative interactomics applied to bovine fescue toxicosis. Scientific reports	RS Mote, NS Hill, JH Skarlupka, JM Carpenter, JM Lourenco, TR Callaway, VT Tran, K Liu, MR Smith, DP Jones, G Suen, NM Filipov	03/22/2022
Metabolic effects of the schizophrenia-associated 3q29 deletion. Translational psychiatry	RM Pollak, RH Purcell, TP Rutkowski, T Malone, KJ Pachura, GJ Bassell, MP Epstein, PA Dawson, MR Smith, DP Jones, ME Zwick, ST Warren, T Caspary, D Weinshenker, JG Mulle	02/17/2022
Pesticide residue intake from fruits and vegetables and alterations in the serum metabolome of women undergoing infertility treatment. Environment international	RB Hood, D Liang, YH Chiu, H Sandoval-Insausti, JE Chavarro, D Jones, R Hauser, AJ Gaskins	02/01/2022
Length of PM_2.5 exposure and alterations in the serum metabolome among women undergoing infertility treatment. Environmental epidemiology (Philadelphia, Pa.)	RB Hood, D Liang, Z Tang, I Kloog, J Schwartz, F Laden, D Jones, AJ Gaskins	02/01/2022
Integrated molecular response of exposure to traffic-related pollutants in the US trucking industry. Environment international	DI Walker, JE Hart, CJ Patel, R Rudel, JH Chu, E Garshick, KD Pennell, F Laden, DP Jones	01/01/2022
Per- and polyfluoroalkyl substance (PFAS) exposure, maternal metabolomic perturbation, and fetal growth in African American women: A meet-in-the-middle approach. Environment international	CJ Chang, DB Barr, PB Ryan, P Panuwet, MM Smarr, K Liu, K Kannan, V Yakimavets, Y Tan, V Ly, CJ Marsit, DP Jones, EJ Corwin, AL Dunlop, D Liang	01/01/2022
High-resolution metabolomics of exposure to tobacco smoke during pregnancy and adverse birth outcomes in the Atlanta African American maternal-child cohort. Environmental pollution (Barking, Essex : 1987)	Y Tan, DB Barr, PB Ryan, V Fedirko, JA Sarnat, AJ Gaskins, CJ Chang, Z Tang, CJ Marsit, EJ Corwin, DP Jones, AL Dunlop, D Liang	01/01/2022
Child serum metabolome and traffic-related air pollution exposure in pregnancy. Environmental research	B Ritz, Q Yan, D He, J Wu, DI Walker, K Uppal, DP Jones, JE Heck	01/01/2022
An actionable annotation scoring framework for gas chromatography-high-resolution mass spectrometry. Exposome	JP Koelmel, H Xie, EJ Price, EZ Lin, KE Manz, P Stelben, MK Paige, S Papazian, J Okeme, DP Jones, D Barupal, JA Bowden, P Rostkowski, KD Pennell, V Nikiforov, T Wang, X Hu, Y Lai, GW Miller, DI Walker, JW Martin, KJ Godri Pollitt	01/01/2022
Tandem Mass Tagging Based Identification of Proteome Signatures for Reductive Stress Cardiomyopathy. Frontiers in cardiovascular medicine	S Sunny, A Jyothidasan, CL David, K Parsawar, A Veerappan, DP Jones, S Pogwizd, NS Rajasekaran	01/01/2022
Malaria disrupts the rhesus macaque gut microbiome. Frontiers in cellular and infection microbiology	DN Farinella, S Kaur, V Tran, M Cabrera-Mora, CJ Joyner, SA Lapp, SB Pakala, MV Nural, JD DeBarry, JC Kissinger, DP Jones, A Moreno, MR Galinski, RJ Cordy	01/01/2022
An atlas of metallome and metabolome interactions and associations with incident diabetes in the Strong Heart Family Study. Environment international	TR Sanchez, X Hu, J Zhao, V Tran, N Loiacono, YM Go, W Goessler, S Cole, J Umans, DP Jones, A Navas-Acien, K Uppal	12/01/2021
Microbial metabolite delta-valerobetaine is a diet-dependent obesogen. Nature metabolism	KH Liu, JA Owens, B Saeedi, CE Cohen, MP Bellissimo, C Naudin, T Darby, S Druzak, K Maner-Smith, M Orr, X Hu, J Fernandes, MC Camacho, S Hunter-Chang, D VanInsberghe, C Ma, T Ganesh, SM Yeligar, K Uppal, YM Go, JA Alvarez, MB Vos, TR Ziegler, MH Woodworth, CS Kraft, RM Jones, E Ortlund, AS Neish, DP Jones	12/01/2021
Metabolome-wide association study of occupational exposure to benzene. Carcinogenesis	N Rothman, R Vermeulen, L Zhang, W Hu, S Yin, SM Rappaport, MT Smith, DP Jones, M Rahman, Q Lan, DI Walker	11/12/2021
Plasma Metabolomics of Intermediate and Neovascular Age-Related Macular Degeneration Patients. Cells	SL Mitchell, C Ma, WK Scott, A Agarwal, MA Pericak-Vance, JL Haines, DP Jones, K Uppal, MA Brantley	11/12/2021
Infant Metabolome in Relation to Prenatal DHA Supplementation and Maternal Single-Nucleotide Polymorphism rs174602: Secondary Analysis of a Randomized Controlled Trial in Mexico. The Journal of nutrition	S Tandon, I Gonzalez-Casanova, A Barraza-Villarreal, I Romieu, H Demmelmair, DP Jones, B Koletzko, AD Stein, U Ramakrishnan	11/02/2021
Plasma high-resolution metabolomic phenotyping of lean mass in a United States adult cohort. JPEN. Journal of parenteral and enteral nutrition	MP Bellissimo, DP Jones, GS Martin, JA Alvarez, TR Ziegler	11/01/2021
Lung metabolome of 1,3-butadiene exposed Collaborative Cross mice reflects metabolic phenotype of human lung cancer. Toxicology	M Nellis, CO Caperton, K Liu, V Tran, YM Go, LM Hallberg, BT Ameredes, DP Jones, G Boysen	11/01/2021
Plasma Metabolic Phenotypes of HPV-Associated versus Smoking-Associated Head and Neck Cancer and Patient Survival. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology	RC Eldridge, K Uppal, DN Hayes, MR Smith, X Hu, ZS Qin, JJ Beitler, AH Miller, EC Wommack, KA Higgins, DM Shin, B Ulrich, DC Qian, NF Saba, DW Bruner, DP Jones, C Xiao	10/01/2021
Periconception air pollution, metabolomic biomarkers, and fertility among women undergoing assisted reproduction. Environment international	AJ Gaskins, Z Tang, RB Hood, J Ford, JD Schwartz, DP Jones, F Laden, D Liang	10/01/2021
Metabolomics as a Truly Translational Tool for Precision Medicine. International journal of toxicology	JC Schmidt, BV Dougherty, RD Beger, DP Jones, MA Schmidt, WB Mattes	10/01/2021
A scalable workflow to characterize the human exposome. Nature communications	X Hu, DI Walker, Y Liang, MR Smith, ML Orr, BD Juran, C Ma, K Uppal, M Koval, GS Martin, DC Neujahr, CJ Marsit, YM Go, KD Pennell, GW Miller, KN Lazaridis, DP Jones	09/22/2021
Large scale enzyme based xenobiotic identification for exposomics. Nature communications	KH Liu, CM Lee, G Singer, P Bais, F Castellanos, MH Woodworth, TR Ziegler, CS Kraft, GW Miller, S Li, YM Go, ET Morgan, DP Jones	09/14/2021
Metabolomic Profiling Demonstrates Postprandial Changes in Fatty Acids and Glycerophospholipids Are Associated with Fasting Inflammation in Guatemalan Adults. The Journal of nutrition	EA Yu, S He, DP Jones, YV Sun, M Ramirez-Zea, AD Stein	09/04/2021
Exposure to Perfluoroalkyl Substances and Glucose Homeostasis in Youth. Environmental health perspectives	JA Goodrich, TL Alderete, BO Baumert, K Berhane, Z Chen, FD Gilliland, MI Goran, X Hu, DP Jones, K Margetaki, S Rock, N Stratakis, D Valvi, DI Walker, DV Conti, L Chatzi	09/01/2021
Plant food intake is associated with lower cadmium body burden in middle-aged adults. European journal of nutrition	KK Dennis, SE Judd, JA Alvarez, K Kahe, DP Jones, TJ Hartman	09/01/2021
AMPK-deficiency forces metformin-challenged cancer cells to switch from carbohydrate metabolism to ketogenesis to support energy metabolism. Oncogene	FR Palma, BA Ratti, V Paviani, DR Coelho, R Miguel, JM Danes, SV Zaichik, AL de Abreu, SO Silva, Y Chen, RL Silverstein, U Karan, DP Jones, MG Bonini	09/01/2021
TCA cycle remodeling drives proinflammatory signaling in humans with pulmonary tuberculosis. PLoS pathogens	JM Collins, DP Jones, A Sharma, M Khadka, KH Liu, RR Kempker, B Prideaux, K Maner-Smith, N Tukvadze, NS Shah, JCM Brust, RP Sékaly, NR Gandhi, HM Blumberg, EA Ortlund, TR Ziegler	09/01/2021
Firsthand and Secondhand Exposure Levels of Maltol-Flavored Electronic Nicotine Delivery System Vapors Disrupt Amino Acid Metabolism. Toxicological sciences : an official journal of the Society of Toxicology	ZR Jarrell, MR Smith, X He, M Orr, DP Jones, YM Go	07/16/2021
High-Resolution Metabolomic Assessment of Pesticide Exposure in Central Valley, California. Chemical research in toxicology	Q Yan, KC Paul, DI Walker, MA Furlong, I Del Rosario, Y Yu, K Zhang, MG Cockburn, DP Jones, BR Ritz	05/17/2021
Metabolomics analysis of maternal serum exposed to high air pollution during pregnancy and risk of autism spectrum disorder in offspring. Environmental research	JH Kim, Q Yan, K Uppal, X Cui, C Ling, DI Walker, JE Heck, OS von Ehrenstein, DP Jones, B Ritz	05/01/2021
Genetic or Toxicant-Induced Disruption of Vesicular Monoamine Storage and Global Metabolic Profiling in Caenorhabditis elegans. Toxicological sciences : an official journal of the Society of Toxicology	JM Bradner, V Kalia, FK Lau, M Sharma, ML Bucher, M Johnson, M Chen, DI Walker, DP Jones, GW Miller	04/12/2021
The Metabolomic Underpinnings of Symptom Burden in Patients With Multiple Chronic Conditions. Biological research for nursing	EJ Corwin, G Brewster, SB Dunbar, J Wells, V Hertzberg, M Holstad, MK Song, D Jones	04/01/2021
Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndrome. Nature communications	G Inak, A Rybak-Wolf, P Lisowski, TM Pentimalli, R Jüttner, P Glažar, K Uppal, E Bottani, D Brunetti, C Secker, A Zink, D Meierhofer, MT Henke, M Dey, U Ciptasari, B Mlody, T Hahn, M Berruezo-Llacuna, N Karaiskos, M Di Virgilio, JA Mayr, SB Wortmann, J Priller, M Gotthardt, DP Jones, E Mayatepek, W Stenzel, S Diecke, R Kühn, EE Wanker, N Rajewsky, M Schuelke, A Prigione	03/26/2021
Distribution of phytochelatins, metal-binding compounds, in plant foods: A survey of commonly consumed fruits, vegetables, grains and legumes. Food chemistry	KK Dennis, KH Liu, K Uppal, YM Go, DP Jones	03/01/2021
Plasma high-resolution metabolomics identifies linoleic acid and linked metabolic pathways associated with bone mineral density. Clinical nutrition (Edinburgh, Scotland)	MP Bellissimo, TR Ziegler, DP Jones, KH Liu, J Fernandes, JL Roberts, MN Weitzmann, R Pacifici, JA Alvarez	02/01/2021
Metabolome-wide association study of flavorant vanillin exposure in bronchial epithelial cells reveals disease-related perturbations in metabolism. Environment international	MR Smith, ZR Jarrell, M Orr, KH Liu, YM Go, DP Jones	02/01/2021
Application of high-resolution metabolomics to identify biological pathways perturbed by traffic-related air pollution. Environmental research	Z Li, D Liang, D Ye, HH Chang, TR Ziegler, DP Jones, ST Ebelt	02/01/2021
Plasma metabolomics of autism spectrum disorder and influence of shared components in proband families. Exposome	MK Chung, MR Smith, Y Lin, DI Walker, D Jones, CJ Patel, SW Kong	01/01/2021
Multiomics Analysis of Structural Magnetic Resonance Imaging of the Brain and Cerebrospinal Fluid Metabolomics in Cognitively Normal and Impaired Adults. Frontiers in aging neuroscience	RC Eldridge, K Uppal, M Shokouhi, MR Smith, X Hu, ZS Qin, DP Jones, I Hajjar	01/01/2021
Cruciferous vegetables (Brassica oleracea) confer cytoprotective effects in Drosophila intestines. Gut microbes	JT Lyles, L Luo, K Liu, DP Jones, RM Jones, CL Quave	01/01/2021
A metabolomic study of cervical dystonia. Parkinsonism & related disorders	C Liu, L Scorr, G Kilic-Berkmen, A Cotton, SA Factor, A Freeman, V Tran, K Liu, K Uppal, D Jones, HA Jinnah, YV Sun	01/01/2021
Environmental chemicals and metabolic disruption in primary and secondary human parathyroid tumors. Surgery	X Hu, N Saunders, S Safley, MR Smith, Y Liang, V Tran, J Sharma, DP Jones, CJ Weber	01/01/2021
Correction to: Air Pollution and Adverse Pregnancy and Birth Outcomes: Mediation Analysis Using Metabolomic Profiles. Current environmental health reports	K Inoue, Q Yan, OA Arah, K Paul, DI Walker, DP Jones, B Ritz	12/01/2020
Dysregulated lipid and fatty acid metabolism link perfluoroalkyl substances exposure and impaired glucose metabolism in young adults. Environment international	Z Chen, T Yang, DI Walker, DC Thomas, C Qiu, L Chatzi, TL Alderete, JS Kim, DV Conti, CV Breton, D Liang, ER Hauser, DP Jones, FD Gilliland	12/01/2020
Physical Fitness but Not Diet Quality Distinguishes Lean and Normal Weight Obese Adults. Journal of the Academy of Nutrition and Dietetics	MP Bellissimo, EL Bettermann, PH Tran, BH Crain, EP Ferranti, JN Binongo, TJ Hartman, DP Jones, TR Ziegler, JA Alvarez	12/01/2020
Plasma Metabolomic Signatures of Chronic Obstructive Pulmonary Disease and the Impact of Genetic Variants on Phenotype-Driven Modules. Network and systems medicine	LA Gillenwater, KA Pratte, BD Hobbs, MH Cho, Y Zhuang, E Halper-Stromberg, C Cruickshank-Quinn, N Reisdorph, I Petrache, WW Labaki, WK O'Neal, VE Ortega, DP Jones, K Uppal, S Jacobson, G Michelotti, CH Wendt, KJ Kechris, RP Bowler	12/01/2020
Sampling interstitial fluid from human skin using a microneedle patch. Science translational medicine	PP Samant, MM Niedzwiecki, N Raviele, V Tran, J Mena-Lapaix, DI Walker, EI Felner, DP Jones, GW Miller, MR Prausnitz	11/25/2020
Metabolomic Profiling After a Meal Shows Greater Changes and Lower Metabolic Flexibility in Cardiometabolic Diseases. Journal of the Endocrine Society	EA Yu, T Yu, DP Jones, M Ramirez-Zea, AD Stein	11/01/2020
Metabolomic Associations with Serum Bone Turnover Markers. Nutrients	MP Bellissimo, JL Roberts, DP Jones, KH Liu, KR Taibl, K Uppal, MN Weitzmann, R Pacifici, H Drissi, TR Ziegler, JA Alvarez	10/16/2020
Metabolomics Analysis of Aspirin's Effects in Human Colon Tissue and Associations with Adenoma Risk. Cancer prevention research (Philadelphia, Pa.)	EL Barry, V Fedirko, K Uppal, C Ma, K Liu, LA Mott, JL Peacock, MN Passarelli, JA Baron, DP Jones	10/01/2020
Environmental chemical burden in metabolic tissues and systemic biological pathways in adolescent bariatric surgery patients: A pilot untargeted metabolomic approach. Environment international	D Valvi, DI Walker, T Inge, SM Bartell, T Jenkins, M Helmrath, TR Ziegler, MA La Merrill, SP Eckel, D Conti, Y Liang, DP Jones, R McConnell, L Chatzi	10/01/2020
Air Pollution and Adverse Pregnancy and Birth Outcomes: Mediation Analysis Using Metabolomic Profiles. Current environmental health reports	K Inoue, Q Yan, OA Arah, K Paul, DI Walker, DP Jones, B Ritz	09/01/2020
MTOR-initiated metabolic switch and degeneration in the retinal pigment epithelium. FASEB journal : official publication of the Federation of American Societies for Experimental Biology	YM Go, J Zhang, J Fernandes, C Litwin, R Chen, TG Wensel, DP Jones, J Cai, Y Chen	09/01/2020
Addressing the batch effect issue for LC/MS metabolomics data in data preprocessing. Scientific reports	Q Liu, D Walker, K Uppal, Z Liu, C Ma, V Tran, S Li, DP Jones, T Yu	08/17/2020
Untargeted Metabolomics Screen of Mid-pregnancy Maternal Serum and Autism in Offspring. Autism research : official journal of the International Society for Autism Research	B Ritz, Q Yan, K Uppal, Z Liew, X Cui, C Ling, K Inoue, O von Ehrenstein, DI Walker, DP Jones	08/01/2020
Macronutrient, Energy, and Bile Acid Metabolism Pathways Altered Following a Physiological Meal Challenge, Relative to Fasting, among Guatemalan Adults. The Journal of nutrition	EA Yu, T Yu, DP Jones, R Martorell, M Ramirez-Zea, AD Stein	08/01/2020
Reference Standardization for Quantification and Harmonization of Large-Scale Metabolomics. Analytical chemistry	KH Liu, M Nellis, K Uppal, C Ma, V Tran, Y Liang, DI Walker, DP Jones	07/07/2020
Hepatic fat is a stronger correlate of key clinical and molecular abnormalities than visceral and abdominal subcutaneous fat in youth. BMJ open diabetes research & care	CE Cioffi, KMV Narayan, K Liu, K Uppal, DP Jones, V Tran, T Yu, JA Alvarez, MP Bellissimo, KM Maner-Smith, B Pierpoint, S Caprio, N Santoro, MB Vos	07/01/2020
Reactive oxygen species (ROS) as pleiotropic physiological signalling agents. Nature reviews. Molecular cell biology	H Sies, DP Jones	07/01/2020
Reductive stress impairs myogenic differentiation. Redox biology	NS Rajasekaran, SB Shelar, DP Jones, JR Hoidal	07/01/2020
Plasma acylcarnitine levels increase with healthy aging. Aging	ZR Jarrell, MR Smith, X Hu, M Orr, KH Liu, AA Quyyumi, DP Jones, YM Go	06/16/2020
N8-Acetylspermidine: A Polyamine Biomarker in Ischemic Cardiomyopathy With Reduced Ejection Fraction. Journal of the American Heart Association	A Nayak, C Liu, A Mehta, YA Ko, AS Tahhan, DS Dhindsa, K Uppal, DP Jones, J Butler, AA Morris, AA Quyyumi	06/02/2020
Reductive Stress Causes Pathological Cardiac Remodeling and Diastolic Dysfunction. Antioxidants & redox signaling	G Shanmugam, D Wang, SS Gounder, J Fernandes, SH Litovsky, K Whitehead, RK Radhakrishnan, S Franklin, JR Hoidal, TW Kensler, L Dell'Italia, V Darley-Usmar, ED Abel, DP Jones, P Ping, NS Rajasekaran	06/01/2020
Unsupervised dimensionality reduction for exposome research. Current opinion in environmental science & health	V Kalia, DI Walker, KM Krasnodemski, DP Jones, GW Miller, MA Kioumourtzoglou	06/01/2020
Tryptophan metabolism is differently regulated between large and small dogs. GeroScience	JM Hoffman, JV Kiklevich, M Austad, V Tran, DP Jones, A Royal, C Henry, SN Austad	06/01/2020
Tryptophan catabolism reflects disease activity in human tuberculosis. JCI insight	JM Collins, A Siddiqa, DP Jones, K Liu, RR Kempker, A Nizam, NS Shah, N Ismail, SG Ouma, N Tukvadze, S Li, CL Day, J Rengarajan, JC Brust, NR Gandhi, JD Ernst, HM Blumberg, TR Ziegler	05/21/2020
Oxidative Stress Is Associated With Diastolic Dysfunction in Women With Ischemia With No Obstructive Coronary Artery Disease. Journal of the American Heart Association	M Raad, A AlBadri, J Wei, PK Mehta, J Maughan, A Gadh, L Thomson, DP Jones, AA Quyyumi, CJ Pepine, CN Bairey Merz	05/18/2020
Gut-Resident Lactobacilli Activate Hepatic Nrf2 and Protect Against Oxidative Liver Injury. Cell metabolism	BJ Saeedi, KH Liu, JA Owens, S Hunter-Chang, MC Camacho, RU Eboka, B Chandrasekharan, NF Baker, TM Darby, BS Robinson, RM Jones, DP Jones, AS Neish	05/05/2020
Cardiovascular Risk and Resilience Among Black Adults: Rationale and Design of the MECA Study. Journal of the American Heart Association	SJ Islam, JH Kim, M Topel, C Liu, YA Ko, MS Mujahid, M Sims, M Mubasher, K Ejaz, J Morgan-Billingslea, K Jones, EK Waller, D Jones, K Uppal, SB Dunbar, P Pemu, V Vaccarino, CD Searles, P Baltrus, TT Lewis, AA Quyyumi, H Taylor	05/05/2020
Omics Integration for Mitochondria Systems Biology. Antioxidants & redox signaling	X Hu, YM Go, DP Jones	04/20/2020
The Redox Theory of Development. Antioxidants & redox signaling	JM Hansen, DP Jones, C Harris	04/01/2020
Metabolic Pathways Associated With Term Labor Induction Course in African American Women. Biological research for nursing	NS Carlson, JK Frediani, EJ Corwin, A Dunlop, D Jones	04/01/2020
A vision for exposome epidemiology: The pregnancy exposome in relation to breast cancer in the Child Health and Development Studies. Reproductive toxicology (Elmsford, N.Y.)	DP Jones, BA Cohn	03/01/2020
Metabolome Wide Association Study of serum DDT and DDE in Pregnancy and Early Postpartum. Reproductive toxicology (Elmsford, N.Y.)	X Hu, S Li, P Cirillo, N Krigbaum, V Tran, T Ishikawa, MA La Merrill, DP Jones, B Cohn	03/01/2020
Reprint of "Metabolome Wide Association Study of Serum Poly and Perfluoroalkyl Substances (PFASs) in Pregnancy and Early Postpartum". Reproductive toxicology (Elmsford, N.Y.)	X Hu, S Li, PM Cirillo, NY Krigbaum, V Tran, DP Jones, BA Cohn	03/01/2020
Understanding mixed environmental exposures using metabolomics via a hierarchical community network model in a cohort of California women in 1960's. Reproductive toxicology (Elmsford, N.Y.)	S Li, P Cirillo, X Hu, V Tran, N Krigbaum, S Yu, DP Jones, B Cohn	03/01/2020
Toxic tall fescue grazing increases susceptibility of the Angus steer fecal microbiota and plasma/urine metabolome to environmental effects. Scientific reports	RS Mote, NS Hill, JH Skarlupka, VT Tran, DI Walker, ZB Turner, ZP Sanders, DP Jones, G Suen, NM Filipov	02/12/2020
Role of heat shock protein and cytokine expression as markers of clinical outcomes with glutamine-supplemented parenteral nutrition in surgical ICU patients. Clinical nutrition (Edinburgh, Scotland)	PE Wischmeyer, RA Mintz-Cole, CH Baird, KA Easley, AK May, HC Sax, KA Kudsk, L Hao, PH Tran, DP Jones, HM Blumberg, TR Ziegler	02/01/2020
Metabolomic Pathways Predicting Labor Dystocia by Maternal Body Mass Index. AJP reports	NS Carlson, JK Frediani, EJ Corwin, A Dunlop, D Jones	01/01/2020
Untargeted metabolomics reveal dysregulations in sugar, methionine, and tyrosine pathways in the prodromal state of AD. Alzheimer's & dementia (Amsterdam, Netherlands)	I Hajjar, C Liu, DP Jones, K Uppal	01/01/2020
Differences in plasma metabolites related to Alzheimer's disease, APOE ε4 status, and ethnicity. Alzheimer's & dementia (New York, N. Y.)	B Vardarajan, V Kalia, J Manly, A Brickman, D Reyes-Dumeyer, R Lantigua, I Ionita-Laza, DP Jones, GW Miller, R Mayeux	01/01/2020
High-resolution metabolomic profiling of Alzheimer's disease in plasma. Annals of clinical and translational neurology	MM Niedzwiecki, DI Walker, JC Howell, KD Watts, DP Jones, GW Miller, WT Hu	01/01/2020
Toxicity testing in the 21st century: progress in the past decade and future perspectives. Archives of toxicology	D Krewski, ME Andersen, MG Tyshenko, K Krishnan, T Hartung, K Boekelheide, JF Wambaugh, D Jones, M Whelan, R Thomas, C Yauk, T Barton-Maclaren, I Cote	01/01/2020
Metabolites and metabolic pathways associated with glucocorticoid resistance in pregnant African-American women. Comprehensive psychoneuroendocrinology	E Corwin, AL Dunlop, J Fernandes, S Li, B Pearce, DP Jones	01/01/2020
Perfluoroalkyl substances and severity of nonalcoholic fatty liver in Children: An untargeted metabolomics approach. Environment international	R Jin, R McConnell, C Catherine, S Xu, DI Walker, N Stratakis, DP Jones, GW Miller, C Peng, DV Conti, MB Vos, L Chatzi	01/01/2020
Early Pregnancy Serum Metabolite Profiles Associated with Hypertensive Disorders of Pregnancy in African American Women: A Pilot Study. Journal of pregnancy	EP Ferranti, JK Frediani, R Mitchell, J Fernandes, S Li, DP Jones, E Corwin, AL Dunlop	01/01/2020
Regulating colonic dendritic cells by commensal glycosylated large surface layer protein A to sustain gut homeostasis against pathogenic inflammation. Mucosal immunology	Y Ge, M Gong, M Zadeh, J Li, JR Abbott, W Li, L Morel, R Sonon, NT Supekar, P Azadi, Y Wang, DP Jones, S Li, M Mohamadzadeh	01/01/2020
Untargeted high-resolution plasma metabolomic profiling predicts outcomes in patients with coronary artery disease. PloS one	A Mehta, C Liu, A Nayak, AS Tahhan, YA Ko, DS Dhindsa, JH Kim, SS Hayek, LS Sperling, PK Mehta, YV Sun, K Uppal, DP Jones, AA Quyyumi	01/01/2020
A precision medicine approach to defining the impact of doxorubicin on the bioenergetic-metabolite interactome in human platelets. Redox biology	MR Smith, BK Chacko, MS Johnson, GA Benavides, K Uppal, YM Go, DP Jones, VM Darley-Usmar	01/01/2020
Cardiovascular disease risk and pathophysiology in South Asians: can longitudinal multi-omics shed light? Wellcome open research	YV Sun, C Liu, L Staimez, MK Ali, H Chang, D Kondal, S Patel, D Jones, V Mohan, N Tandon, D Prabhakaran, AA Quyyumi, KMV Narayan, A Agrawal	01/01/2020
Targeting soluble tumor necrosis factor as a potential intervention to lower risk for late-onset Alzheimer's disease associated with obesity, metabolic syndrome, and type 2 diabetes. Alzheimer's research & therapy	ME De Sousa Rodrigues, MC Houser, DI Walker, DP Jones, J Chang, CJ Barnum, MG Tansey	12/31/2019
Discovery of metabolic alterations in the serum of patients infected with Plasmodium spp. by high-resolution metabolomics. Metabolomics : Official journal of the Metabolomic Society	J Na, A Khan, JK Kim, A Wadood, YL Choe, DI Walker, DP Jones, CS Lim, YH Park	12/23/2019
Advances in Comprehensive Exposure Assessment: Opportunities for the US Military. Journal of occupational and environmental medicine	PL Krahl, E Benchoff, YM Go, DP Jones, MR Smith, DI Walker, K Uppal, CF Woeller, TH Thatcher, J Thakar, RP Phipps, P Hopke, MJ Utell, TM Mallon	12/01/2019
Analysis of Postdeployment Serum Samples Identifies Potential Biomarkers of Exposure to Burn Pits and Other Environmental Hazards. Journal of occupational and environmental medicine	TH Thatcher, CF Woeller, J Thakar, A Khan, PK Hopke, MR Smith, K Uppal, DI Walker, YM Go, DP Jones, PL Krahl, TM Mallon, PJ Sime, RP Phipps, MJ Utell	12/01/2019
Associations of Benzo(ghi)perylene and Heptachlorodibenzo-p-dioxin in Serum of Service Personnel Deployed to Balad, Iraq, and Bagram, Afghanistan Correlates With Perturbed Amino Acid Metabolism in Human Lung Fibroblasts. Journal of occupational and environmental medicine	MR Smith, CF Woeller, K Uppal, TH Thatcher, DI Walker, PK Hopke, P Rohrbeck, TM Mallon, PL Krahl, MJ Utell, YM Go, DP Jones	12/01/2019
Benzo[a]pyrene Perturbs Mitochondrial and Amino Acid Metabolism in Lung Epithelial Cells and Has Similar Correlations With Metabolic Changes in Human Serum. Journal of occupational and environmental medicine	MR Smith, DI Walker, K Uppal, MJ Utell, PK Hopke, TM Mallon, PL Krahl, P Rohrbeck, YM Go, DP Jones	12/01/2019
Environmental Chemicals Altered in Association With Deployment for High Risk Areas. Journal of occupational and environmental medicine	MR Smith, K Uppal, DI Walker, MJ Utell, PK Hopke, TM Mallon, PL Krahl, P Rohrbeck, YM Go, DP Jones	12/01/2019
Exposure to Heptachlorodibenzo-p-dioxin (HpCDD) Regulates microRNA Expression in Human Lung Fibroblasts. Journal of occupational and environmental medicine	CF Woeller, TH Thatcher, J Thakar, A Cornwell, MR Smith, DP Jones, PK Hopke, PJ Sime, P Krahl, TM Mallon, RP Phipps, MJ Utell	12/01/2019
Integrative Network Analysis Linking Clinical Outcomes With Environmental Exposures and Molecular Variations in Service Personnel Deployed to Balad and Bagram. Journal of occupational and environmental medicine	J Thakar, TH Thatcher, MR Smith, CF Woeller, DI Walker, MJ Utell, PK Hopke, TM Mallon, PL Krahl, P Rohrbeck, YM Go, DP Jones, K Uppal	12/01/2019
Metabolome-Wide Association Study of Deployment to Balad, Iraq or Bagram, Afghanistan. Journal of occupational and environmental medicine	YM Go, MR Smith, DI Walker, K Uppal, P Rohrbeck, PL Krahl, PK Hopke, MJ Utell, TM Mallon, DP Jones	12/01/2019
Use of Biomarkers to Assess Environmental Exposures and Health Outcomes in Deployed Troops. Journal of occupational and environmental medicine	TM Mallon, PK Krahl, KM Haines, DI Walker, T Thatcher, CF Woeller, J Thakar, PK Hopke, JC Gaydos, MR Smith, K Uppal, YM Go, DP Jones, M Utell	12/01/2019
Metabolomics of Aerobic Exercise in Chronic Stroke Survivors: A Pilot Study. Journal of stroke and cerebrovascular diseases : the official journal of National Stroke Association	MC Serra, CJ Accardi, C Ma, Y Park, V Tran, DP Jones, CE Hafer-Macko, AS Ryan	12/01/2019
Plasma High-Resolution Metabolomics Differentiates Adults with Normal Weight Obesity from Lean Individuals. Obesity (Silver Spring, Md.)	MP Bellissimo, Q Cai, TR Ziegler, KH Liu, PH Tran, MB Vos, GS Martin, DP Jones, T Yu, JA Alvarez	11/01/2019
Development of a Plasma Screening Panel for Pediatric Nonalcoholic Fatty Liver Disease Using Metabolomics. Hepatology communications	RD Khusial, CE Cioffi, SA Caltharp, AM Krasinskas, A Alazraki, J Knight-Scott, R Cleeton, E Castillo-Leon, DP Jones, B Pierpont, S Caprio, N Santoro, A Akil, MB Vos	10/01/2019
Enhanced Keap1-Nrf2 signaling protects the myocardium from isoproterenol-induced pathological remodeling in mice. Redox biology	G Shanmugam, AK Challa, SH Litovsky, A Devarajan, D Wang, DP Jones, VM Darley-Usmar, NS Rajasekaran	10/01/2019
Maternal serum metabolome and traffic-related air pollution exposure in pregnancy. Environment international	Q Yan, Z Liew, K Uppal, X Cui, C Ling, JE Heck, OS von Ehrenstein, J Wu, DI Walker, DP Jones, B Ritz	09/01/2019
Response of Beef Cattle Fecal Microbiota to Grazing on Toxic Tall Fescue. Applied and environmental microbiology	RS Mote, NS Hill, JH Skarlupka, ZB Turner, ZP Sanders, DP Jones, G Suen, NM Filipov	08/01/2019
Metabolome Wide Association Study of Serum Poly and Perfluoroalkyl Substances (PFASs) in Pregnancy and Early Postpartum. Reproductive toxicology (Elmsford, N.Y.)	X Hu, S Li, PM Cirillo, NY Krigbaum, V Tran, DP Jones, BA Cohn	08/01/2019
Environmental Cadmium Enhances Lung Injury by Respiratory Syncytial Virus Infection. The American journal of pathology	X Hu, KH Kim, Y Lee, J Fernandes, MR Smith, YJ Jung, M Orr, SM Kang, DP Jones, YM Go	08/01/2019
ADAP-GC 4.0: Application of Clustering-Assisted Multivariate Curve Resolution to Spectral Deconvolution of Gas Chromatography-Mass Spectrometry Metabolomics Data. Analytical chemistry	A Smirnov, Y Qiu, W Jia, DI Walker, DP Jones, X Du	07/16/2019
A non-lethal malarial infection results in reduced drug metabolizing enzyme expression and drug clearance in mice. Malaria journal	SM Mimche, CM Lee, KH Liu, PN Mimche, RD Harvey, TJ Murphy, BA Nyagode, DP Jones, TJ Lamb, ET Morgan	07/12/2019
Arginine and Carnitine Metabolites Are Altered in Diabetic Retinopathy. Investigative ophthalmology & visual science	K Sumarriva, K Uppal, C Ma, DJ Herren, Y Wang, IM Chocron, C Warden, SL Mitchell, LG Burgess, MP Goodale, MP Osborn, AJ Ferreira, JC Law, EF Cherney, DP Jones, MA Brantley	07/01/2019
Metabolomics of childhood exposure to perfluoroalkyl substances: a cross-sectional study. Metabolomics : Official journal of the Metabolomic Society	SL Kingsley, DI Walker, AM Calafat, A Chen, GD Papandonatos, Y Xu, DP Jones, BP Lanphear, KD Pennell, JM Braun	06/21/2019
Low-dose cadmium potentiates lung inflammatory response to 2009 pandemic H1N1 influenza virus in mice. Environment international	JD Chandler, X Hu, EJ Ko, S Park, J Fernandes, YT Lee, ML Orr, L Hao, MR Smith, DC Neujahr, K Uppal, SM Kang, DP Jones, YM Go	06/01/2019
Perturbations of the arginine metabolome following exposures to traffic-related air pollution in a panel of commuters with and without asthma. Environment international	D Liang, CN Ladva, R Golan, T Yu, DI Walker, SE Sarnat, R Greenwald, K Uppal, V Tran, DP Jones, AG Russell, JA Sarnat	06/01/2019
Metabolomic assessment of exposure to near-highway ultrafine particles. Journal of exposure science & environmental epidemiology	DI Walker, KJ Lane, K Liu, K Uppal, AP Patton, JL Durant, DP Jones, D Brugge, KD Pennell	06/01/2019
Alterations in immune and renal biomarkers among workers occupationally exposed to low levels of trichloroethylene below current regulatory standards. Occupational and environmental medicine	KM Lee, L Zhang, R Vermeulen, W Hu, BA Bassig, JJ Wong, C Qiu, M Purdue, C Wen, DI Walker, DP Jones, L Li, Y Huang, N Rothman, MT Smith, Q Lan	06/01/2019
Distinct amino acid and lipid perturbations characterize acute versus chronic malaria. JCI insight	RJ Cordy, R Patrapuvich, LN Lili, M Cabrera-Mora, JT Chien, GK Tharp, M Khadka, EV Meyer, SA Lapp, CJ Joyner, A Garcia, S Banton, V Tran, V Luvira, S Rungin, T Saeseu, N Rachaphaew, SB Pakala, JD DeBarry, JC Kissinger, EA Ortlund, SE Bosinger, JW Barnwell, DP Jones, K Uppal, S Li, J Sattabongkot, A Moreno, MR Galinski	05/02/2019
Perfluoroalkyl substances, metabolomic profiling, and alterations in glucose homeostasis among overweight and obese Hispanic children: A proof-of-concept analysis. Environment international	TL Alderete, R Jin, DI Walker, D Valvi, Z Chen, DP Jones, C Peng, FD Gilliland, K Berhane, DV Conti, MI Goran, L Chatzi	05/01/2019
Multigenerational metabolic profiling in the Michigan PBB registry. Environmental research	DI Walker, ME Marder, Y Yano, M Terrell, Y Liang, DB Barr, GW Miller, DP Jones, M Marcus, KD Pennell	05/01/2019
Metabolomic Responses to Manganese Dose in SH-SY5Y Human Neuroblastoma Cells. Toxicological sciences : an official journal of the Society of Toxicology	J Fernandes, JD Chandler, KH Liu, K Uppal, L Hao, X Hu, YM Go, DP Jones	05/01/2019
Mitochondria in precision medicine; linking bioenergetics and metabolomics in platelets. Redox biology	BK Chacko, MR Smith, MS Johnson, G Benavides, ML Culp, J Pilli, S Shiva, K Uppal, YM Go, DP Jones, VM Darley-Usmar	04/01/2019
Redox Systems Biology of Nutrition and Oxidative Stress. The Journal of nutrition	KK Dennis, YM Go, DP Jones	04/01/2019
Metabolic perturbations in classic galactosemia beyond the Leloir pathway: Insights from an untargeted metabolomic study. Journal of inherited metabolic disease	S Taylor Fischer, AB Frederick, V Tran, S Li, DP Jones, JL Fridovich-Keil	03/01/2019
Neonatal intestinal immune regulation by the commensal bacterium, P. UF1. Mucosal immunology	Y Ge, M Gong, N Colliou, M Zadeh, J Li, DP Jones, S Li, M Mohamadzadeh	03/01/2019
The metabolome as a biomarker of mortality risk in the common marmoset. American journal of primatology	JM Hoffman, C Ross, V Tran, DEL Promislow, S Tardif, DP Jones	02/01/2019
Low-dose cadmium disrupts mitochondrial citric acid cycle and lipid metabolism in mouse lung. Free radical biology & medicine	X Hu, JD Chandler, S Park, K Liu, J Fernandes, M Orr, MR Smith, C Ma, SM Kang, K Uppal, DP Jones, YM Go	02/01/2019
Metabolome-wide association study of anti-epileptic drug treatment during pregnancy. Toxicology and applied pharmacology	DI Walker, K Perry-Walker, RH Finnell, KD Pennell, V Tran, RC May, TF McElrath, KJ Meador, PB Pennell, DP Jones	01/15/2019
The Exposome: Molecules to Populations. Annual review of pharmacology and toxicology	MM Niedzwiecki, DI Walker, R Vermeulen, M Chadeau-Hyam, DP Jones, GW Miller	01/06/2019
A biplot correlation range for group-wise metabolite selection in mass spectrometry. BioData mining	YH Park, T Kong, JR Roede, DP Jones, K Lee	01/01/2019
The metabolome: A key measure for exposome research in epidemiology. Current epidemiology reports	DI Walker, D Valvi, N Rothman, Q Lan, GW Miller, DP Jones	01/01/2019
Phytochelatin database: a resource for phytochelatin complexes of nutritional and environmental metals. Database : the journal of biological databases and curation	KK Dennis, K Uppal, KH Liu, C Ma, B Liang, YM Go, DP Jones	01/01/2019
Transcriptome Analysis Reveals Distinct Responses to Physiologic versus Toxic Manganese Exposure in Human Neuroblastoma Cells. Frontiers in genetics	J Fernandes, JD Chandler, LN Lili, K Uppal, X Hu, L Hao, YM Go, DP Jones	01/01/2019
Symptom Science Research in the Era of Big Data: Leveraging Interdisciplinary Resources and Partners to Make It Happen. Journal of nursing scholarship : an official publication of Sigma Theta Tau International Honor Society of Nursing	EJ Corwin, DP Jones, AL Dunlop	01/01/2019
Proteomic analysis of microbial induced redox-dependent intestinal signaling. Redox biology	JD Matthews, AR Reedy, H Wu, BH Hinrichs, TM Darby, C Addis, BS Robinson, YM Go, DP Jones, RM Jones, AS Neish	01/01/2019
The Effects of Graded Levels of Calorie Restriction: XIII. Global Metabolomics Screen Reveals Graded Changes in Circulating Amino Acids, Vitamins, and Bile Acids in the Plasma of C57BL/6 Mice. The journals of gerontology. Series A, Biological sciences and medical sciences	CL Green, QA Soltow, SE Mitchell, D Derous, Y Wang, L Chen, JJ Han, DEL Promislow, D Lusseau, A Douglas, DP Jones, JR Speakman	01/01/2019
Selenium supplementation prevents metabolic and transcriptomic responses to cadmium in mouse lung. Biochimica et biophysica acta. General subjects	X Hu, JD Chandler, J Fernandes, ML Orr, L Hao, K Uppal, DC Neujahr, DP Jones, YM Go	11/01/2018
Use of high-resolution metabolomics for the identification of metabolic signals associated with traffic-related air pollution. Environment international	D Liang, JL Moutinho, R Golan, T Yu, CN Ladva, M Niedzwiecki, DI Walker, SE Sarnat, HH Chang, R Greenwald, DP Jones, AG Russell, JA Sarnat	11/01/2018
Selenium at the redox interface of the genome, metabolome and exposome. Free radical biology & medicine	J Fernandes, X Hu, M Ryan Smith, YM Go, DP Jones	11/01/2018
Determination of thiocyanate in exhaled breath condensate. Free radical biology & medicine	JD Chandler, H Horati, DI Walker, E Pagliano, R Tirouvanziam, M Veltman, BJ Scholte, HM Janssens, YM Go, DP Jones	10/01/2018
The Carnitine Shuttle Pathway is Altered in Patients With Neovascular Age-Related Macular Degeneration. Investigative ophthalmology & visual science	SL Mitchell, K Uppal, SM Williamson, K Liu, LG Burgess, V Tran, AC Umfress, KL Jarrell, JN Cooke Bailey, A Agarwal, M Pericak-Vance, JL Haines, WK Scott, DP Jones, MA Brantley	10/01/2018
Myeloperoxidase oxidation of methionine associates with early cystic fibrosis lung disease. The European respiratory journal	JD Chandler, C Margaroli, H Horati, MB Kilgore, M Veltman, HK Liu, AJ Taurone, L Peng, L Guglani, K Uppal, YM Go, HAWM Tiddens, BJ Scholte, R Tirouvanziam, DP Jones, HM Janssens	10/01/2018
Integrative metabolomics and transcriptomics signatures of clinical tolerance to Plasmodium vivax reveal activation of innate cell immunity and T cell signaling. Redox biology	LG Gardinassi, M Arévalo-Herrera, S Herrera, RJ Cordy, V Tran, MR Smith, MS Johnson, B Chacko, KH Liu, VM Darley-Usmar, YM Go, DP Jones, MR Galinski, S Li	07/01/2018
Putrescine as indicator of manganese neurotoxicity: Dose-response study in human SH-SY5Y cells. Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association	J Fernandes, JD Chandler, KH Liu, K Uppal, YM Go, DP Jones	06/01/2018
Selenium Supplementation Alters Hepatic Energy and Fatty Acid Metabolism in Mice. The Journal of nutrition	X Hu, JD Chandler, ML Orr, L Hao, K Liu, K Uppal, YM Go, DP Jones	05/01/2018
Untargeted metabolomics reveals multiple metabolites influencing smoking-related DNA methylation. Epigenomics	Y Huang, Q Hui, DI Walker, K Uppal, J Goldberg, DP Jones, V Vaccarino, YV Sun	04/01/2018
Human Suction Blister Fluid Composition Determined Using High-Resolution Metabolomics. Analytical chemistry	MM Niedzwiecki, P Samant, DI Walker, V Tran, DP Jones, MR Prausnitz, GW Miller	03/20/2018
Mitochondrial network responses in oxidative physiology and disease. Free radical biology & medicine	YM Go, J Fernandes, X Hu, K Uppal, DP Jones	02/20/2018
xMWAS: a data-driven integration and differential network analysis tool. Bioinformatics (Oxford, England)	K Uppal, C Ma, YM Go, DP Jones, J Wren	02/15/2018
Higher Mediterranean Diet Quality Scores and Lower Body Mass Index Are Associated with a Less-Oxidized Plasma Glutathione and Cysteine Redox Status in Adults. The Journal of nutrition	EL Bettermann, TJ Hartman, KA Easley, EP Ferranti, DP Jones, AA Quyyumi, V Vaccarino, TR Ziegler, JA Alvarez	02/01/2018
Oxidative stress predicts cognitive decline with aging in healthy adults: an observational study. Journal of neuroinflammation	I Hajjar, SS Hayek, FC Goldstein, G Martin, DP Jones, A Quyyumi	01/16/2018
ADAP-GC 3.2: Graphical Software Tool for Efficient Spectral Deconvolution of Gas Chromatography-High-Resolution Mass Spectrometry Metabolomics Data. Journal of proteome research	A Smirnov, W Jia, DI Walker, DP Jones, X Du	01/05/2018
Pilot randomized controlled trial of a Mediterranean diet or diet supplemented with fish oil, walnuts, and grape juice in overweight or obese US adults. BMC nutrition	LM Jaacks, S Sher, C Staercke, M Porkert, WR Alexander, DP Jones, V Vaccarino, TR Ziegler, AA Quyyumi	01/01/2018
Redox Equivalents and Mitochondrial Bioenergetics. Methods in molecular biology (Clifton, N.J.)	JR Roede, YM Go, DP Jones	01/01/2018
High-resolution plasma metabolomics analysis to detect Mycobacterium tuberculosis-associated metabolites that distinguish active pulmonary tuberculosis in humans. PloS one	JM Collins, DI Walker, DP Jones, N Tukvadze, KH Liu, VT Tran, K Uppal, JK Frediani, KA Easley, N Shenvi, M Khadka, EA Ortlund, RR Kempker, HM Blumberg, TR Ziegler	01/01/2018
Particulate metal exposures induce plasma metabolome changes in a commuter panel study. PloS one	CN Ladva, R Golan, D Liang, R Greenwald, DI Walker, K Uppal, AU Raysoni, V Tran, T Yu, WD Flanders, GW Miller, DP Jones, JA Sarnat	01/01/2018
Relation of Changes in Body Fat Distribution to Oxidative Stress. The American journal of cardiology	HM Kelli, FE Corrigan, RE Heinl, DS Dhindsa, M Hammadah, A Samman-Tahhan, P Sandesara, WT O'Neal, I Al Mheid, YA Ko, V Vaccarino, TR Ziegler, LS Sperling, K Brigham, D Jones, GS Martin, AA Quyyumi	12/15/2017
Yale school of public health symposium on lifetime exposures and human health: the exposome; summary and future reflections. Human genomics	CH Johnson, TJ Athersuch, GW Collman, S Dhungana, DF Grant, DP Jones, CJ Patel, V Vasiliou	12/08/2017
Metabolomic profiles of plasma, exhaled breath condensate, and saliva are correlated with potential for air toxics detection. Journal of breath research	CN Ladva, R Golan, R Greenwald, T Yu, SE Sarnat, WD Flanders, K Uppal, DI Walker, V Tran, D Liang, DP Jones, JA Sarnat	12/06/2017
Association between oxidative stress and atrial fibrillation. Heart rhythm	A Samman Tahhan, PB Sandesara, SS Hayek, A Alkhoder, K Chivukula, M Hammadah, H Mohamed-Kelli, WT O'Neal, M Topel, N Ghasemzadeh, YA Ko, H Aida, M Gafeer, L Sperling, V Vaccarino, Y Liang, DP Jones, AA Quyyumi	12/01/2017
Metabolome-wide association study of peripheral parasitemia in Plasmodium vivax malaria. International journal of medical microbiology : IJMM	LG Gardinassi, RJ Cordy, MVG Lacerda, JL Salinas, WM Monteiro, GC Melo, AM Siqueira, FF Val, V Tran, DP Jones, MR Galinski, S Li	12/01/2017
Commensal Propionibacterium strain UF1 mitigates intestinal inflammation via Th17 cell regulation. The Journal of clinical investigation	N Colliou, Y Ge, B Sahay, M Gong, M Zadeh, JL Owen, J Neu, WG Farmerie, F Alonzo, K Liu, DP Jones, S Li, M Mohamadzadeh	11/01/2017
Low-level maternal exposure to nicotine associates with significant metabolic perturbations in second-trimester amniotic fluid. Environment international	ST Fischer, LN Lili, S Li, VT Tran, KB Stewart, CE Schwartz, DP Jones, SL Sherman, JL Fridovich-Keil	10/01/2017
Corrigendum to "Plasma metabolomics in adults with cystic fibrosis during a pulmonary exacerbation: A pilot randomized study of high-dose vitamin D₃ administration" [Metabolism vol. 70, May 2017, pages 31-41]. Metabolism: clinical and experimental	JA Alvarez, EY Chong, DI Walker, JD Chandler, ES Michalski, RE Grossmann, K Uppal, S Li, JK Frediani, R Tirouvanziam, VT Tran, V Tangpricha, DP Jones, TR Ziegler	09/01/2017
Redox theory of aging: implications for health and disease. Clinical science (London, England : 1979)	YM Go, DP Jones	07/15/2017
A Small Molecule Solution to the Vexing Problem of Restenosis: Predicting Restenosis. JACC. Cardiovascular interventions	AA Quyyumi, A Samman Tahhan, DP Jones	07/10/2017
Metabolomics of fescue toxicosis in grazing beef steers. Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association	RS Mote, NS Hill, K Uppal, VT Tran, DP Jones, NM Filipov	07/01/2017
Oxidative Stress. Annual review of biochemistry	H Sies, C Berndt, DP Jones	06/20/2017
Metabolic Phenotypes of Response to Vaccination in Humans. Cell	S Li, NL Sullivan, N Rouphael, T Yu, S Banton, MS Maddur, M McCausland, C Chiu, J Canniff, S Dubey, K Liu, V Tran, T Hagan, S Duraisingham, A Wieland, AK Mehta, JA Whitaker, S Subramaniam, DP Jones, A Sette, K Vora, A Weinberg, MJ Mulligan, HI Nakaya, M Levin, R Ahmed, B Pulendran	05/18/2017
Cadmium stimulates myofibroblast differentiation and mouse lung fibrosis. Toxicology	X Hu, J Fernandes, DP Jones, YM Go	05/15/2017
Plasma metabolomics in adults with cystic fibrosis during a pulmonary exacerbation: A pilot randomized study of high-dose vitamin D₃ administration. Metabolism: clinical and experimental	JA Alvarez, EY Chong, DI Walker, JD Chandler, ES Michalski, RE Grossmann, K Uppal, S Li, JK Frediani, R Tirouvanziam, VT Tran, V Tangpricha, DP Jones, TR Ziegler	05/01/2017
High-resolution metabolomics to identify urine biomarkers in corticosteroid-resistant asthmatic children. The Journal of allergy and clinical immunology	YH Park, AM Fitzpatrick, CA Medriano, DP Jones	05/01/2017
Western diet induces colonic nitrergic myenteric neuropathy and dysmotility in mice via saturated fatty acid- and lipopolysaccharide-induced TLR4 signalling. The Journal of physiology	F Reichardt, B Chassaing, BG Nezami, G Li, S Tabatabavakili, S Mwangi, K Uppal, B Liang, M Vijay-Kumar, D Jones, AT Gewirtz, S Srinivasan	03/01/2017
xMSannotator: An R Package for Network-Based Annotation of High-Resolution Metabolomics Data. Analytical chemistry	K Uppal, DI Walker, DP Jones	01/17/2017
Redox dynamics of manganese as a mitochondrial life-death switch. Biochemical and biophysical research communications	MR Smith, J Fernandes, YM Go, DP Jones	01/15/2017
Chronic psychological stress and high-fat high-fructose diet disrupt metabolic and inflammatory gene networks in the brain, liver, and gut and promote behavioral deficits in mice. Brain, behavior, and immunity	ME de Sousa Rodrigues, M Bekhbat, MC Houser, J Chang, DI Walker, DP Jones, CMP Oller do Nascimento, CJ Barnum, MG Tansey	01/01/2017
Plasma metabolomics reveals membrane lipids, aspartate/asparagine and nucleotide metabolism pathway differences associated with chloroquine resistance in Plasmodium vivax malaria. PloS one	K Uppal, JL Salinas, WM Monteiro, F Val, RJ Cordy, K Liu, GC Melo, AM Siqueira, B Magalhaes, MR Galinski, MVG Lacerda, DP Jones	01/01/2017
From the Cover: Manganese Stimulates Mitochondrial H2O2 Production in SH-SY5Y Human Neuroblastoma Cells Over Physiologic as well as Toxicologic Range. Toxicological sciences : an official journal of the Society of Toxicology	J Fernandes, L Hao, KM Bijli, JD Chandler, M Orr, X Hu, DP Jones, YM Go	01/01/2017
Computational Metabolomics: A Framework for the Million Metabolome. Chemical research in toxicology	K Uppal, DI Walker, K Liu, S Li, YM Go, DP Jones	12/19/2016
Exposure Memory and Lung Regeneration. Annals of the American Thoracic Society	YM Go, DP Jones	12/01/2016
Metabolic pathways of lung inflammation revealed by high-resolution metabolomics (HRM) of H1N1 influenza virus infection in mice. American journal of physiology. Regulatory, integrative and comparative physiology	JD Chandler, X Hu, EJ Ko, S Park, YT Lee, M Orr, J Fernandes, K Uppal, SM Kang, DP Jones, YM Go	11/01/2016
High-resolution metabolomics of occupational exposure to trichloroethylene. International journal of epidemiology	DI Walker, K Uppal, L Zhang, R Vermeulen, M Smith, W Hu, MP Purdue, X Tang, B Reiss, S Kim, L Li, H Huang, KD Pennell, DP Jones, N Rothman, Q Lan	10/01/2016
Inhibition of ileal bile acid uptake protects against nonalcoholic fatty liver disease in high-fat diet-fed mice. Science translational medicine	A Rao, A Kosters, JE Mells, W Zhang, KD Setchell, AM Amanso, GM Wynn, T Xu, BT Keller, H Yin, S Banton, DP Jones, H Wu, PA Dawson, SJ Karpen	09/21/2016
Nuclear Thioredoxin-1 Overexpression Attenuates Alcohol-Mediated Nrf2 Signaling and Lung Fibrosis. Alcoholism, clinical and experimental research	V Sueblinvong, ST Mills, DC Neujahr, YM Go, DP Jones, DM Guidot	09/01/2016
The Exposome: A New Frontier for Education. The American biology teacher	KK Dennis, DP Jones	09/01/2016
Deployment-Associated Exposure Surveillance With High-Resolution Metabolomics. Journal of occupational and environmental medicine	DI Walker, CT Mallon, PK Hopke, K Uppal, YM Go, P Rohrbeck, KD Pennell, DP Jones	08/01/2016
High-Resolution Metabolomics Assessment of Military Personnel: Evaluating Analytical Strategies for Chemical Detection. Journal of occupational and environmental medicine	KH Liu, DI Walker, K Uppal, V Tran, P Rohrbeck, TM Mallon, DP Jones	08/01/2016
High-Resolution Metabolomics for Nutrition and Health Assessment of Armed Forces Personnel. Journal of occupational and environmental medicine	CJ Accardi, DI Walker, K Uppal, AA Quyyumi, P Rohrbeck, KD Pennell, CT Mallon, DP Jones	08/01/2016
Introduction to Department of Defense Research on Burn Pits, Biomarkers, and Health Outcomes Related to Deployment in Iraq and Afghanistan. Journal of occupational and environmental medicine	CT Mallon, MP Rohrbeck, MK Haines, DP Jones, M Utell, PK Hopke, RP Phipps, DI Walker, T Thatcher, CF Woeller, CP Baird, HB Pollard, CL Dalgard, JC Gaydos	08/01/2016
Metabolic Pathways and Networks Associated With Tobacco Use in Military Personnel. Journal of occupational and environmental medicine	DP Jones, DI Walker, K Uppal, P Rohrbeck, CT Mallon, YM Go	08/01/2016
Pilot Metabolome-Wide Association Study of Benzo(a)pyrene in Serum From Military Personnel. Journal of occupational and environmental medicine	DI Walker, KD Pennell, K Uppal, X Xia, PK Hopke, MJ Utell, RP Phipps, PJ Sime, P Rohrbeck, CT Mallon, DP Jones	08/01/2016
Low-dose oral cadmium increases airway reactivity and lung neuronal gene expression in mice. Physiological reports	JD Chandler, C Wongtrakool, SA Banton, S Li, ML Orr, DB Barr, DC Neujahr, RL Sutliff, YM Go, DP Jones	07/01/2016
Response to Letter Regarding Article "Novel Biomarker of Oxidative Stress Is Associated With Risk of Death in Patients With Coronary Artery Disease". Circulation	RS Patel, N Ghasemzadeh, DJ Eapen, S Sher, S Arshad, YA Ko, E Veledar, H Samady, AM Zafari, L Sperling, V Vaccarino, DP Jones, AA Quyyumi	05/31/2016
Amino Acid Metabolism is Altered in Adolescents with Nonalcoholic Fatty Liver Disease-An Untargeted, High Resolution Metabolomics Study. The Journal of pediatrics	R Jin, S Banton, VT Tran, JV Konomi, S Li, DP Jones, MB Vos	05/01/2016
Effect of Angiotensin II Type I Receptor Blockade with Valsartan on Carotid Artery Atherosclerosis: A Double Blind Randomized Clinical Trial Comparing Valsartan and Placebo (EFFERVESCENT). American heart journal	R Ramadan, SS Dhawan, JN Binongo, A Alkhoder, DP Jones, JN Oshinski, AA Quyyumi	04/01/2016
Efficacy and Safety of Glutamine-supplemented Parenteral Nutrition in Surgical ICU Patients: An American Multicenter Randomized Controlled Trial. Annals of surgery	TR Ziegler, AK May, G Hebbar, KA Easley, DP Griffith, N Dave, BR Collier, GA Cotsonis, L Hao, T Leong, AK Manatunga, ES Rosenberg, DP Jones, GS Martin, GL Jensen, HC Sax, KA Kudsk, JR Galloway, HM Blumberg, ME Evans, PE Wischmeyer	04/01/2016
Hydrogen peroxide and central redox theory for aerobic life: A tribute to Helmut Sies: Scout, trailblazer, and redox pioneer. Archives of biochemistry and biophysics	DP Jones	04/01/2016
Plasma Metabolomics of Common Marmosets (Callithrix jacchus) to Evaluate Diet and Feeding Husbandry. Journal of the American Association for Laboratory Animal Science : JAALAS	SA Banton, QA Soltow, KH Liu, K Uppal, DE Promislow, ML Power, SD Tardif, LM Wachtman, DP Jones	03/01/2016
Macronutrient intake and body composition changes during anti-tuberculosis therapy in adults. Clinical nutrition (Edinburgh, Scotland)	JK Frediani, E Sanikidze, M Kipiani, N Tukvadze, G Hebbar, U Ramakrishnan, DP Jones, KA Easley, N Shenvi, RR Kempker, V Tangpricha, HM Blumberg, TR Ziegler	02/01/2016
Novel Biomarker of Oxidative Stress Is Associated With Risk of Death in Patients With Coronary Artery Disease. Circulation	RS Patel, N Ghasemzadeh, DJ Eapen, S Sher, S Arshad, YA Ko, E Veledar, H Samady, AM Zafari, L Sperling, V Vaccarino, DP Jones, AA Quyyumi	01/26/2016
Correlation of the lung microbiota with metabolic profiles in bronchoalveolar lavage fluid in HIV infection. Microbiome	SK Cribbs, K Uppal, S Li, DP Jones, L Huang, L Tipton, A Fitch, RM Greenblatt, L Kingsley, DM Guidot, E Ghedin, A Morris	01/20/2016
Metabolomics and Mycobacterial Disease: Don't Forget the Bioinformatics. Annals of the American Thoracic Society	JM Collins, RR Kempker, TR Ziegler, HM Blumberg, DP Jones	01/01/2016
High-Resolution Metabolomics: Review of the Field and Implications for Nursing Science and the Study of Preterm Birth. Biological research for nursing	S Li, AL Dunlop, DP Jones, EJ Corwin	01/01/2016
Metabolic Profiles of Obesity in American Indians: The Strong Heart Family Study. PloS one	Q Zhao, Y Zhu, LG Best, JG Umans, K Uppal, VT Tran, DP Jones, ET Lee, BV Howard, J Zhao	01/01/2016
Sequencing the exposome: A call to action. Toxicology reports	DP Jones	01/01/2016
Anticancer therapeutic potential of Mn porphyrin/ascorbate system. Free radical biology & medicine	A Tovmasyan, RS Sampaio, MK Boss, JC Bueno-Janice, BH Bader, M Thomas, JS Reboucas, M Orr, JD Chandler, YM Go, DP Jones, TN Venkatraman, S Haberle, N Kyui, CD Lascola, MW Dewhirst, I Spasojevic, L Benov, I Batinic-Haberle	12/01/2015
Reference Standardization for Mass Spectrometry and High-resolution Metabolomics Applications to Exposome Research. Toxicological sciences : an official journal of the Society of Toxicology	YM Go, DI Walker, Y Liang, K Uppal, QA Soltow, V Tran, F Strobel, AA Quyyumi, TR Ziegler, KD Pennell, GW Miller, DP Jones	12/01/2015
Local false discovery rate estimation using feature reliability in LC/MS metabolomics data. Scientific reports	EY Chong, Y Huang, H Wu, N Ghasemzadeh, K Uppal, AA Quyyumi, DP Jones, T Yu	11/24/2015
The effects of age and dietary restriction on the tissue-specific metabolome of Drosophila. Aging cell	MJ Laye, V Tran, DP Jones, P Kapahi, DE Promislow	10/01/2015
Low-Dose Cadmium Causes Metabolic and Genetic Dysregulation Associated With Fatty Liver Disease in Mice. Toxicological sciences : an official journal of the Society of Toxicology	YM Go, RL Sutliff, JD Chandler, R Khalidur, BY Kang, FA Anania, M Orr, L Hao, BA Fowler, DP Jones	10/01/2015
The Redox Code. Antioxidants & redox signaling	DP Jones, H Sies	09/20/2015
Redox theory of aging. Redox biology	DP Jones	08/01/2015
The cysteine proteome. Free radical biology & medicine	YM Go, JD Chandler, DP Jones	07/01/2015
Metabolome-Wide Association Study of Primary Open Angle Glaucoma. Investigative ophthalmology & visual science	LG Burgess, K Uppal, DI Walker, RM Roberson, V Tran, MB Parks, EA Wade, AT May, AC Umfress, KL Jarrell, BO Stanley, J Kuchtey, RW Kuchtey, DP Jones, MA Brantley	07/01/2015
Cerebrospinal fluid concentrations of N-acetylcysteine after oral administration in Parkinson's disease. Parkinsonism & related disorders	M Katz, SJ Won, Y Park, A Orr, DP Jones, RA Swanson, GA Glass	05/01/2015
Honokiol blocks and reverses cardiac hypertrophy in mice by activating mitochondrial Sirt3. Nature communications	VB Pillai, S Samant, NR Sundaresan, H Raghuraman, G Kim, MY Bonner, JL Arbiser, DI Walker, DP Jones, D Gius, MP Gupta	04/14/2015
Biomarkers of oxidative stress study VI. Endogenous plasma antioxidants fail as useful biomarkers of endotoxin-induced oxidative stress. Free radical biology & medicine	MB Kadiiska, S Peddada, RA Herbert, S Basu, K Hensley, DP Jones, GE Hatch, RP Mason	04/01/2015
High-resolution metabolomics to discover potential parasite-specific biomarkers in a Plasmodium falciparum erythrocytic stage culture system. Malaria journal	YH Park, YP Shi, B Liang, CA Medriano, YH Jeon, E Torres, K Uppal, L Slutsker, DP Jones	03/24/2015
Metabolome-wide association study of phenylalanine in plasma of common marmosets. Amino acids	YM Go, DI Walker, QA Soltow, K Uppal, LM Wachtman, FH Strobel, K Pennell, DE Promislow, DP Jones	03/01/2015
Tumor necrosis factor-alpha antagonism with etanercept improves endothelial progenitor cell counts in patients with psoriasis: etanercept, vascular function and endothelial progenitor cells in psoriasis. International journal of cardiology	SS Hayek, R Neuman, N Kavtaradze, S Sher, D Jones, Q Li, L Zhao, SC Chen, E Waller, A Quyyumi	03/01/2015
Differential effects of nebivolol and metoprolol on arterial stiffness, circulating progenitor cells, and oxidative stress. Journal of the American Society of Hypertension : JASH	SS Hayek, JC Poole, R Neuman, AA Morris, M Khayata, N Kavtaradze, ML Topel, JG Binongo, Q Li, DP Jones, EK Waller, AA Quyyumi	03/01/2015
Metabolomics profile comparisons of irradiated and nonirradiated stored donor red blood cells. Transfusion	RM Patel, JD Roback, K Uppal, T Yu, DP Jones, CD Josephson	03/01/2015
Novel metabolic markers for the risk of diabetes development in American Indians. Diabetes care	J Zhao, Y Zhu, N Hyun, D Zeng, K Uppal, VT Tran, T Yu, D Jones, J He, ET Lee, BV Howard	02/01/2015
Disturbed flow induces systemic changes in metabolites in mouse plasma: a metabolomics study using ApoE⁻/⁻ mice with partial carotid ligation. American journal of physiology. Regulatory, integrative and comparative physiology	YM Go, CW Kim, DI Walker, DW Kang, S Kumar, M Orr, K Uppal, AA Quyyumi, H Jo, DP Jones	01/01/2015
Renin-Angiotensin Activation and Oxidative Stress in Early Heart Failure with Preserved Ejection Fraction. BioMed research international	SI Negi, EM Jeong, I Shukrullah, E Veleder, DP Jones, TH Fan, S Varadarajan, SM Danilov, T Fukai, SC Dudley	01/01/2015
MetabNet: An R Package for Metabolic Association Analysis of High-Resolution Metabolomics Data. Frontiers in bioengineering and biotechnology	K Uppal, QA Soltow, DE Promislow, LM Wachtman, AA Quyyumi, DP Jones	01/01/2015
Metabolic Characterization of the Common Marmoset (Callithrix jacchus). PloS one	YM Go, Y Liang, K Uppal, QA Soltow, DE Promislow, LM Wachtman, DP Jones	01/01/2015
Metabolic Consequences of Chronic Alcohol Abuse in Non-Smokers: A Pilot Study. PloS one	O Obianyo, Y Liang, EL Burnham, A Mehta, Y Park, K Uppal, FL Harris, DP Jones, LA Brown	01/01/2015
Invariance and plasticity in the Drosophila melanogaster metabolomic network in response to temperature. BMC systems biology	R Hariharan, JM Hoffman, AS Thomas, QA Soltow, DP Jones, DE Promislow	12/24/2014
Redox pioneer: professor Helmut Sies. Antioxidants & redox signaling	DP Jones, R Radi	12/20/2014
Short-term oral atrazine exposure alters the plasma metabolome of male C57BL/6 mice and disrupts α-linolenate, tryptophan, tyrosine and other major metabolic pathways. Toxicology	Z Lin, JR Roede, C He, DP Jones, NM Filipov	12/04/2014
Autophagy is essential for effector CD8(+) T cell survival and memory formation. Nature immunology	X Xu, K Araki, S Li, JH Han, L Ye, WG Tan, BT Konieczny, MW Bruinsma, J Martinez, EL Pearce, DR Green, DP Jones, HW Virgin, R Ahmed	12/01/2014
Improving peak detection in high-resolution LC/MS metabolomics data using preexisting knowledge and machine learning approach. Bioinformatics (Oxford, England)	T Yu, DP Jones	10/15/2014
Vitamin D status is independently associated with plasma glutathione and cysteine thiol/disulphide redox status in adults. Clinical endocrinology	JA Alvarez, R Chowdhury, DP Jones, GS Martin, KL Brigham, JN Binongo, TR Ziegler, V Tangpricha	09/01/2014
Metabolomics in the fight against malaria. Memorias do Instituto Oswaldo Cruz	JL Salinas, JC Kissinger, DP Jones, MR Galinski	08/01/2014
Oxidation of survival factor MEF2D in neuronal death and Parkinson's disease. Antioxidants & redox signaling	L Gao, H She, W Li, J Zeng, J Zhu, DP Jones, Z Mao, G Gao, Q Yang	06/20/2014
Metabolomics of bronchoalveolar lavage differentiate healthy HIV-1-infected subjects from controls. AIDS research and human retroviruses	SK Cribbs, Y Park, DM Guidot, GS Martin, LA Brown, J Lennox, DP Jones	06/01/2014
Oxidative stress is associated with increased pulmonary artery systolic pressure in humans. Hypertension (Dallas, Tex. : 1979)	N Ghasemzadeh, RS Patel, DJ Eapen, E Veledar, H Al Kassem, P Manocha, M Khayata, AM Zafari, L Sperling, DP Jones, AA Quyyumi	06/01/2014
Manganese-based superoxide dismutase mimics modify both acute and long-term outcome severity in a Drosophila melanogaster model of classic galactosemia. Antioxidants & redox signaling	PP Jumbo-Lucioni, EL Ryan, ML Hopson, HM Bishop, T Weitner, A Tovmasyan, I Spasojevic, I Batinic-Haberle, Y Liang, DP Jones, JL Fridovich-Keil	05/20/2014
Reply: To PMID 24369802. The Journal of allergy and clinical immunology	AM Fitzpatrick, Y Park, LA Brown, DP Jones	05/01/2014
Integrated redox proteomics and metabolomics of mitochondria to identify mechanisms of cd toxicity. Toxicological sciences : an official journal of the Society of Toxicology	YM Go, JR Roede, M Orr, Y Liang, DP Jones	05/01/2014
Age-related alterations of plasma glutathione and oxidation of redox potentials in chimpanzee (Pan troglodytes) and rhesus monkey (Macaca mulatta). Age (Dordrecht, Netherlands)	J Paredes, DP Jones, ME Wilson, JG Herndon	04/01/2014
Bile acid aspiration associated with lung chemical profile linked to other biomarkers of injury after lung transplantation. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	DC Neujahr, K Uppal, SD Force, F Fernandez, C Lawrence, A Pickens, R Bag, C Lockard, AD Kirk, V Tran, K Lee, DP Jones, Y Park	04/01/2014
Metabolomics of ADSOL (AS-1) red blood cell storage. Transfusion medicine reviews	JD Roback, CD Josephson, EK Waller, JL Newman, S Karatela, K Uppal, DP Jones, JC Zimring, LJ Dumont	04/01/2014
Vaccine activation of the nutrient sensor GCN2 in dendritic cells enhances antigen presentation. Science (New York, N.Y.)	R Ravindran, N Khan, HI Nakaya, S Li, J Loebbermann, MS Maddur, Y Park, DP Jones, P Chappert, J Davoust, DS Weiss, HW Virgin, D Ron, B Pulendran	01/17/2014
Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study. Frontiers in cell and developmental biology	KJ Lee, W Yin, D Arafat, Y Tang, K Uppal, V Tran, M Cabrera-Mora, S Lapp, A Moreno, E Meyer, JD DeBarry, S Pakala, V Nayak, JC Kissinger, DP Jones, M Galinski, MP Styczynski, G Gibson	01/01/2014
Mitochondrial metabolomics using high-resolution Fourier-transform mass spectrometry. Methods in molecular biology (Clifton, N.J.)	YM Go, K Uppal, DI Walker, V Tran, L Dury, FH Strobel, H Baubichon-Cortay, KD Pennell, JR Roede, DP Jones	01/01/2014
Disturbed flow enhances inflammatory signaling and atherogenesis by increasing thioredoxin-1 level in endothelial cell nuclei. PloS one	YM Go, DJ Son, H Park, M Orr, L Hao, W Takabe, S Kumar, DW Kang, CW Kim, H Jo, DP Jones	01/01/2014
Plasma metabolomics in human pulmonary tuberculosis disease: a pilot study. PloS one	JK Frediani, DP Jones, N Tukvadze, K Uppal, E Sanikidze, M Kipiani, VT Tran, G Hebbar, DI Walker, RR Kempker, SS Kurani, RA Colas, J Dalli, V Tangpricha, CN Serhan, HM Blumberg, TR Ziegler	01/01/2014
Redox biology: interface of the exposome with the proteome, epigenome and genome. Redox biology	YM Go, DP Jones	01/01/2014
Thiol-reactivity of the fungicide maneb. Redox biology	JR Roede, DP Jones	01/01/2014
Children with severe asthma have unique oxidative stress-associated metabolomic profiles. The Journal of allergy and clinical immunology	AM Fitzpatrick, Y Park, LA Brown, DP Jones	01/01/2014
The nature of nurture: refining the definition of the exposome. Toxicological sciences : an official journal of the Society of Toxicology	GW Miller, DP Jones	01/01/2014
Transcriptome-metabolome wide association study (TMWAS) of maneb and paraquat neurotoxicity reveals network level interactions in toxicologic mechanism. Toxicology reports	JR Roede, K Uppal, Y Park, V Tran, DP Jones	01/01/2014
Actin cytoskeleton redox proteome oxidation by cadmium. American journal of physiology. Lung cellular and molecular physiology	YM Go, M Orr, DP Jones	12/01/2013
Alcohol induces mitochondrial redox imbalance in alveolar macrophages. Free radical biology & medicine	Y Liang, FL Harris, DP Jones, LAS Brown	12/01/2013
Selective targeting of the cysteine proteome by thioredoxin and glutathione redox systems. Molecular & cellular proteomics : MCP	YM Go, JR Roede, DI Walker, DM Duong, NT Seyfried, M Orr, Y Liang, KD Pennell, DP Jones	11/01/2013
The redox proteome. The Journal of biological chemistry	YM Go, DP Jones	09/13/2013
Association between posttraumatic stress disorder and inflammation: a twin study. Brain, behavior, and immunity	L Plantinga, JD Bremner, AH Miller, DP Jones, E Veledar, J Goldberg, V Vaccarino	05/01/2013
Hybrid feature detection and information accumulation using high-resolution LC-MS metabolomics data. Journal of proteome research	T Yu, Y Park, S Li, DP Jones	03/01/2013
High-performance metabolic profiling with dual chromatography-Fourier-transform mass spectrometry (DC-FTMS) for study of the exposome. Metabolomics : Official journal of the Metabolomic Society	QA Soltow, FH Strobel, KG Mansfield, L Wachtman, Y Park, DP Jones	03/01/2013
Short-term treatment with rapamycin and dietary restriction have overlapping and distinctive effects in young mice. The journals of gerontology. Series A, Biological sciences and medical sciences	WC Fok, Y Zhang, AB Salmon, A Bhattacharya, R Gunda, D Jones, W Ward, K Fisher, A Richardson, VI Pérez	02/01/2013
xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data. BMC bioinformatics	K Uppal, QA Soltow, FH Strobel, WS Pittard, KM Gernert, T Yu, DP Jones	01/16/2013
Thiol/disulfide redox states in signaling and sensing. Critical reviews in biochemistry and molecular biology	YM Go, DP Jones	01/01/2013
Oxidative stress contributes to outcome severity in a Drosophila melanogaster model of classic galactosemia. Disease models & mechanisms	PP Jumbo-Lucioni, ML Hopson, D Hang, Y Liang, DP Jones, JL Fridovich-Keil	01/01/2013
A microfluidic systems biology approach for live single-cell mitochondrial ROS imaging. Methods in enzymology	A Kniss, H Lu, DP Jones, ML Kemp	01/01/2013
Predicting network activity from high throughput metabolomics. PLoS computational biology	S Li, Y Park, S Duraisingham, FH Strobel, N Khan, QA Soltow, DP Jones, B Pulendran	01/01/2013
Multifractal analysis for nutritional assessment. PloS one	Y Park, K Lee, TR Ziegler, GS Martin, G Hebbar, B Vidakovic, DP Jones	01/01/2013
Serum metabolomics of slow vs. rapid motor progression Parkinson's disease: a pilot study. PloS one	JR Roede, K Uppal, Y Park, K Lee, V Tran, D Walker, FH Strobel, SL Rhodes, B Ritz, DP Jones	01/01/2013
Characterization of plasma thiol redox potential in a common marmoset model of aging. Redox biology	JR Roede, K Uppal, Y Liang, DE Promislow, LM Wachtman, DP Jones	01/01/2013
Increased nuclear thioredoxin-1 potentiates cadmium-induced cytotoxicity. Toxicological sciences : an official journal of the Society of Toxicology	YM Go, M Orr, DP Jones	01/01/2013
Determination of ebselen-sensitive reactive oxygen metabolites (ebROM) in human serum based upon N,N'-diethyl-1,4-phenylenediamine oxidation. Clinica chimica acta; international journal of clinical chemistry	Y Liang, JR Roede, S Dikalov, NG Miller, SC Dudley, A Quyyumi, DP Jones	12/24/2012
Differential regulation of tissue thiol-disulfide redox status in a murine model of peritonitis. Journal of inflammation (London, England)	SM Benton, Z Liang, L Hao, Y Liang, G Hebbar, DP Jones, CM Coopersmith, TR Ziegler	10/04/2012
Nutritional metabolomics: progress in addressing complexity in diet and health. Annual review of nutrition	DP Jones, Y Park, TR Ziegler	08/21/2012
Lipocalin 2 deficiency dysregulates iron homeostasis and exacerbates endotoxin-induced sepsis. Journal of immunology (Baltimore, Md. : 1950)	G Srinivasan, JD Aitken, B Zhang, FA Carvalho, B Chassaing, R Shashidharamurthy, N Borregaard, DP Jones, AT Gewirtz, M Vijay-Kumar	08/15/2012
Differences in systemic oxidative stress based on race and the metabolic syndrome: the Morehouse and Emory Team up to Eliminate Health Disparities (META-Health) study. Metabolic syndrome and related disorders	AA Morris, L Zhao, RS Patel, DP Jones, Y Ahmed, N Stoyanova, GH Gibbons, V Vaccarino, R Din-Dzietham, AA Quyyumi	08/01/2012
Glutathione redox control of asthma: from molecular mechanisms to therapeutic opportunities. Antioxidants & redox signaling	AM Fitzpatrick, DP Jones, LA Brown	07/15/2012
Children with NAFLD are more sensitive to the adverse metabolic effects of fructose beverages than children without NAFLD. The Journal of clinical endocrinology and metabolism	R Jin, NA Le, S Liu, M Farkas Epperson, TR Ziegler, JA Welsh, DP Jones, CJ McClain, MB Vos	07/01/2012
High-performance metabolic profiling of plasma from seven mammalian species for simultaneous environmental chemical surveillance and bioeffect monitoring. Toxicology	YH Park, K Lee, QA Soltow, FH Strobel, KL Brigham, RE Parker, ME Wilson, RL Sutliff, KG Mansfield, LM Wachtman, TR Ziegler, DP Jones	05/16/2012
Sulfur amino acid-free diet results in increased glutamate in human midbrain: a pilot magnetic resonance spectroscopic study. Nutrition (Burbank, Los Angeles County, Calif.)	Y Park, T Zhao, NG Miller, SB Kim, CJ Accardi, TR Ziegler, X Hu, DP Jones	03/01/2012
Regulation of prostate cancer cell invasion by modulation of extra- and intracellular redox balance. Free radical biology & medicine	L Chaiswing, W Zhong, Y Liang, DP Jones, TD Oberley	01/15/2012
Absence of SOD1 leads to oxidative stress in peripheral nerve and causes a progressive distal motor axonopathy. Experimental neurology	LR Fischer, Y Li, SA Asress, DP Jones, JD Glass	01/01/2012
The differential effect of statins on oxidative stress and endothelial function: atorvastatin versus pravastatin. Journal of clinical lipidology	JR Murrow, S Sher, S Ali, I Uphoff, R Patel, M Porkert, NA Le, D Jones, AA Quyyumi	01/01/2012
Redox equivalents and mitochondrial bioenergetics. Methods in molecular biology (Clifton, N.J.)	JR Roede, YM Go, DP Jones	01/01/2012
Detailed mitochondrial phenotyping by high resolution metabolomics. PloS one	JR Roede, Y Park, S Li, FH Strobel, DP Jones	01/01/2012
Clustering Based on Periodicity in High-Throughput Time Course Data. Statistical analysis and data mining	AJ Blackstock, AK Manatunga, Y Park, DP Jones, T Yu	12/01/2011
The role of plasma aminothiols in the prediction of coronary microvascular dysfunction and plaque vulnerability. Atherosclerosis	SS Dhawan, P Eshtehardi, MC McDaniel, LV Fike, DP Jones, AA Quyyumi, H Samady	11/01/2011
Hepatic oxidative stress in fructose-induced fatty liver is not caused by sulfur amino acid insufficiency. Nutrients	SS Kunde, JR Roede, MB Vos, ML Orr, YM Go, Y Park, TR Ziegler, DP Jones	11/01/2011
Protein Cysteines Map to Functional Networks According to Steady-state Level of Oxidation. Journal of proteomics & bioinformatics	YM Go, DM Duong, J Peng, DP Jones	10/30/2011
Effects of supplemental vitamin D and calcium on biomarkers of inflammation in colorectal adenoma patients: a randomized, controlled clinical trial. Cancer prevention research (Philadelphia, Pa.)	MH Hopkins, J Owen, T Ahearn, V Fedirko, WD Flanders, DP Jones, RM Bostick	10/01/2011
Metabolic effects of albumin therapy in acute lung injury measured by proton nuclear magnetic resonance spectroscopy of plasma: a pilot study. Critical care medicine	Y Park, DP Jones, TR Ziegler, K Lee, K Kotha, T Yu, GS Martin	10/01/2011
Substitution of standard soybean oil with olive oil-based lipid emulsion in parenteral nutrition: comparison of vascular, metabolic, and inflammatory effects. The Journal of clinical endocrinology and metabolism	J Siqueira, D Smiley, C Newton, NA Le, AR Gosmanov, R Spiegelman, L Peng, SJ Osteen, DP Jones, AA Quyyumi, TR Ziegler, GE Umpierrez	10/01/2011
Oxidative stress is associated with impaired arterial elasticity. Atherosclerosis	RS Patel, I Al Mheid, AA Morris, Y Ahmed, N Kavtaradze, S Ali, K Dabhadkar, K Brigham, WC Hooper, RW Alexander, DP Jones, AA Quyyumi	09/01/2011
Clinical trials of antioxidants as cancer prevention agents: past, present, and future. Free radical biology & medicine	M Goodman, RM Bostick, O Kucuk, DP Jones	09/01/2011
A sulfur amino acid-free meal increases plasma lipids in humans. The Journal of nutrition	Y Park, NA Le, T Yu, F Strobel, N Gletsu-Miller, CJ Accardi, KS Lee, S Wu, TR Ziegler, DP Jones	08/01/2011
Thiol redox disturbances in children with severe asthma are associated with posttranslational modification of the transcription factor nuclear factor (erythroid-derived 2)-like 2. The Journal of allergy and clinical immunology	AM Fitzpatrick, ST Stephenson, GR Hadley, L Burwell, M Penugonda, DM Simon, J Hansen, DP Jones, LA Brown	06/01/2011
Maneb and paraquat-mediated neurotoxicity: involvement of peroxiredoxin/thioredoxin system. Toxicological sciences : an official journal of the Society of Toxicology	JR Roede, JM Hansen, YM Go, DP Jones	06/01/2011
Increased inflammatory signaling and lethality of influenza H1N1 by nuclear thioredoxin-1. PloS one	YM Go, SM Kang, JR Roede, M Orr, DP Jones	04/15/2011
Statin therapy for the prevention of atrial fibrillation trial (SToP AF trial). Journal of cardiovascular electrophysiology	S Negi, I Shukrullah, E Veledar, HL Bloom, DP Jones, SC Dudley	04/01/2011
Inflammation is related to coronary flow reserve detected by positron emission tomography in asymptomatic male twins. Journal of the American College of Cardiology	V Vaccarino, D Khan, J Votaw, T Faber, E Veledar, DP Jones, J Goldberg, P Raggi, AA Quyyumi, JD Bremner	03/15/2011
Cysteine/cystine redox signaling in cardiovascular disease. Free radical biology & medicine	YM Go, DP Jones	02/15/2011
Mapping the cysteine proteome: analysis of redox-sensing thiols. Current opinion in chemical biology	DP Jones, YM Go	02/01/2011
Colonic motor dysfunction in human diabetes is associated with enteric neuronal loss and increased oxidative stress. Neurogastroenterology and motility	B Chandrasekharan, M Anitha, R Blatt, N Shahnavaz, D Kooby, C Staley, S Mwangi, DP Jones, SV Sitaraman, S Srinivasan	02/01/2011
Dietary sulfur amino acid effects on fasting plasma cysteine/cystine redox potential in humans. Nutrition (Burbank, Los Angeles County, Calif.)	DP Jones, Y Park, N Gletsu-Miller, Y Liang, T Yu, CJ Accardi, TR Ziegler	02/01/2011
A network perspective on metabolism and aging. Integrative and comparative biology	QA Soltow, DP Jones, DE Promislow	11/01/2010
Redox sensing: orthogonal control in cell cycle and apoptosis signalling. Journal of internal medicine	DP Jones	11/01/2010
A practical approach to detect unique metabolic patterns for personalized medicine. The Analyst	JM Johnson, T Yu, FH Strobel, DP Jones	11/01/2010
Redox compartmentalization and cellular stress. Diabetes, obesity & metabolism	DP Jones, YM Go	10/01/2010
A model of redox kinetics implicates the thiol proteome in cellular hydrogen peroxide responses. Antioxidants & redox signaling	NJ Adimora, DP Jones, ML Kemp	09/15/2010
Redox control systems in the nucleus: mechanisms and functions. Antioxidants & redox signaling	YM Go, DP Jones	08/15/2010
Characterization of apical and basal thiol-disulfide redox regulation in human colonic epithelial cells. American journal of physiology. Gastrointestinal and liver physiology	YO Mannery, TR Ziegler, L Hao, Y Shyntum, DP Jones	08/01/2010
High habitual dietary alpha-linolenic acid intake is associated with decreased plasma soluble interleukin-6 receptor concentrations in male twins. The American journal of clinical nutrition	J Dai, TR Ziegler, RM Bostick, AK Manatunga, DP Jones, J Goldberg, A Miller, G Vogt, PW Wilson, L Jones, L Shallenberger, V Vaccarino	07/01/2010
Oxidative stress modulates PPAR gamma in vascular endothelial cells. Free radical biology & medicine	C Blanquicett, BY Kang, JD Ritzenthaler, DP Jones, CM Hart	06/15/2010
Reactive species and mitochondrial dysfunction: mechanistic significance of 4-hydroxynonenal. Environmental and molecular mutagenesis	JR Roede, DP Jones	06/01/2010
Acetaminophen elimination half-life in humans is unaffected by short-term consumption of sulfur amino acid-free diet. The Journal of pharmacology and experimental therapeutics	YO Mannery, TR Ziegler, Y Park, DP Jones	06/01/2010
Oxidation of plasma cysteine/cystine and GSH/GSSG redox potentials by acetaminophen and sulfur amino acid insufficiency in humans. The Journal of pharmacology and experimental therapeutics	YO Mannery, TR Ziegler, Y Park, DP Jones	06/01/2010
Mechanisms of pathogenesis in drug hepatotoxicity putting the stress on mitochondria. Molecular interventions	DP Jones, JJ Lemasters, D Han, UA Boelsterli, N Kaplowitz	04/01/2010
Postprandial cysteine/cystine redox potential in human plasma varies with meal content of sulfur amino acids. The Journal of nutrition	Y Park, TR Ziegler, N Gletsu-Miller, Y Liang, T Yu, CJ Accardi, DP Jones	04/01/2010
Effect of bone marrow-derived mesenchymal stem cells on endotoxin-induced oxidation of plasma cysteine and glutathione in mice. Stem cells international	SS Iyer, E Torres-Gonzalez, DC Neujahr, M Kwon, KL Brigham, DP Jones, AL Mora, M Rojas	03/08/2010
Antioxidant micronutrients and biomarkers of oxidative stress and inflammation in colorectal adenoma patients: results from a randomized, controlled clinical trial. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology	MH Hopkins, V Fedirko, DP Jones, PD Terry, RM Bostick	03/01/2010
A key role for mitochondria in endothelial signaling by plasma cysteine/cystine redox potential. Free radical biology & medicine	YM Go, H Park, M Koval, M Orr, M Reed, Y Liang, D Smith, J Pohl, DP Jones	01/15/2010
Redox clamp model for study of extracellular thiols and disulfides in redox signaling. Methods in enzymology	YM Go, DP Jones	01/01/2010
Dietary sulfur amino acid supplementation reduces small bowel thiol/disulfide redox state and stimulates ileal mucosal growth after massive small bowel resection in rats. The Journal of nutrition	Y Shyntum, SS Iyer, J Tian, L Hao, YO Mannery, DP Jones, TR Ziegler	12/01/2009
Gene and protein responses of human monocytes to extracellular cysteine redox potential. Toxicological sciences : an official journal of the Society of Toxicology	YM Go, SE Craige, M Orr, KM Gernert, DP Jones	12/01/2009
Measuring the poise of thiol/disulfide couples in vivo. Free radical biology & medicine	DP Jones, Y Liang	11/15/2009
apLCMS--adaptive processing of high-resolution LC/MS data. Bioinformatics (Oxford, England)	T Yu, Y Park, JM Johnson, DP Jones	08/01/2009
Individual variation in macronutrient regulation measured by proton magnetic resonance spectroscopy of human plasma. American journal of physiology. Regulatory, integrative and comparative physiology	Y Park, SB Kim, B Wang, RA Blanco, NA Le, S Wu, CJ Accardi, RW Alexander, TR Ziegler, DP Jones	07/01/2009
Fructose and oxidized low-density lipoprotein in pediatric nonalcoholic fatty liver disease: a pilot study. Archives of pediatrics & adolescent medicine	MB Vos, MB Weber, J Welsh, F Khatoon, DP Jones, PF Whitington, CJ McClain	07/01/2009
Prohibitin is a novel regulator of antioxidant response that attenuates colonic inflammation in mice. Gastroenterology	AL Theiss, M Vijay-Kumar, TS Obertone, DP Jones, JM Hansen, AT Gewirtz, D Merlin, SV Sitaraman	07/01/2009
Long-term exposure to AZT, but not d4T, increases endothelial cell oxidative stress and mitochondrial dysfunction. Cardiovascular toxicology	ER Kline, L Bassit, BI Hernandez-Santiago, MA Detorio, B Liang, DJ Kleinhenz, ER Walp, S Dikalov, DP Jones, RF Schinazi, RL Sutliff	03/01/2009
Loss of total and visceral adipose tissue mass predicts decreases in oxidative stress after weight-loss surgery. Obesity (Silver Spring, Md.)	N Gletsu-Miller, JM Hansen, DP Jones, YM Go, WE Torres, TR Ziegler, E Lin	03/01/2009
HIV-1 transgene expression in rats causes oxidant stress and alveolar epithelial barrier dysfunction. AIDS research and therapy	C Lassiter, X Fan, PC Joshi, BA Jacob, RL Sutliff, DP Jones, M Koval, DM Guidot	02/04/2009
Dietary glutamine and oral antibiotics each improve indexes of gut barrier function in rat short bowel syndrome. American journal of physiology. Gastrointestinal and liver physiology	J Tian, L Hao, P Chandra, DP Jones, IR Willams, AT Gewirtz, TR Ziegler	02/01/2009
Oxidation of extracellular cysteine/cystine redox state in bleomycin-induced lung fibrosis. American journal of physiology. Lung cellular and molecular physiology	SS Iyer, AM Ramirez, JD Ritzenthaler, E Torres-Gonzalez, S Roser-Page, AL Mora, KL Brigham, DP Jones, J Roman, M Rojas	01/01/2009
Oxidation of plasma cysteine/cystine redox state in endotoxin-induced lung injury. American journal of respiratory cell and molecular biology	SS Iyer, DP Jones, KL Brigham, M Rojas	01/01/2009
Thioredoxin redox western analysis. Current protocols in toxicology	YM Go, DP Jones	01/01/2009
Intestinal redox status of major intracellular thiols in a rat model of chronic alcohol consumption. JPEN. Journal of parenteral and enteral nutrition	J Tian, LA Brown, DP Jones, MS Levin, L Wang, DC Rubin, TR Ziegler	01/01/2009
Quantification of redox conditions in the nucleus. Methods in molecular biology (Clifton, N.J.)	YM Go, J Pohl, DP Jones	01/01/2009
Cysteine redox potential determines pro-inflammatory IL-1beta levels. PloS one	SS Iyer, CJ Accardi, TR Ziegler, RA Blanco, JD Ritzenthaler, M Rojas, J Roman, DP Jones	01/01/2009
Redox compartmentalization in eukaryotic cells. Biochimica et biophysica acta	YM Go, DP Jones	11/01/2008
Association between adherence to the Mediterranean diet and oxidative stress. The American journal of clinical nutrition	J Dai, DP Jones, J Goldberg, TR Ziegler, RM Bostick, PW Wilson, AK Manatunga, L Shallenberger, L Jones, V Vaccarino	11/01/2008
Radical-free biology of oxidative stress. American journal of physiology. Cell physiology	DP Jones	10/01/2008
A rapid LC-FTMS method for the analysis of cysteine, cystine and cysteine/cystine steady-state redox potential in human plasma. Clinica chimica acta; international journal of clinical chemistry	JM Johnson, FH Strobel, M Reed, J Pohl, DP Jones	10/01/2008
CART peptides: regulators of body weight, reward and other functions. Nature reviews. Neuroscience	G Rogge, D Jones, GW Hubert, Y Lin, MJ Kuhar	10/01/2008
Targeted deletion of neuropeptide Y (NPY) modulates experimental colitis. PloS one	B Chandrasekharan, V Bala, VL Kolachala, M Vijay-Kumar, D Jones, AT Gewirtz, SV Sitaraman, S Srinivasan	10/01/2008
Identification of thioredoxin-2 as a regulator of the mitochondrial permeability transition. Toxicological sciences : an official journal of the Society of Toxicology	M He, J Cai, YM Go, JM Johnson, WD Martin, JM Hansen, DP Jones	09/01/2008
Vascular oxidative stress and nitric oxide depletion in HIV-1 transgenic rats are reversed by glutathione restoration. American journal of physiology. Heart and circulatory physiology	ER Kline, DJ Kleinhenz, B Liang, S Dikalov, DM Guidot, CM Hart, DP Jones, RL Sutliff	06/01/2008
Tetrahydrobiopterin: a novel antihypertensive therapy. Journal of human hypertension	M Porkert, S Sher, U Reddy, F Cheema, C Niessner, P Kolm, DP Jones, C Hooper, WR Taylor, D Harrison, AA Quyyumi	06/01/2008
Metabolic effects of enteral versus parenteral alanyl-glutamine dipeptide administration in critically ill patients receiving enteral feeding: a pilot study. Clinical nutrition (Edinburgh, Scotland)	M Luo, N Bazargan, DP Griffith, CF Estívariz, LM Leader, KA Easley, NM Daignault, L Hao, JB Meddings, JR Galloway, JB Blumberg, DP Jones, TR Ziegler	04/01/2008
Associations of plasma-soluble fas ligand with aging and age-related macular degeneration. Investigative ophthalmology & visual science	S Jiang, SE Moriarty-Craige, C Li, MJ Lynn, J Cai, DP Jones, P Sternberg	04/01/2008
Nonequilibrium thermodynamics of thiol/disulfide redox systems: a perspective on redox systems biology. Free radical biology & medicine	M Kemp, YM Go, DP Jones	03/15/2008
Detectable serum flagellin and lipopolysaccharide and upregulated anti-flagellin and lipopolysaccharide immunoglobulins in human short bowel syndrome. American journal of physiology. Regulatory, integrative and comparative physiology	TR Ziegler, M Luo, CF Estívariz, DA Moore, SV Sitaraman, L Hao, N Bazargan, JM Klapproth, J Tian, JR Galloway, LM Leader, DP Jones, AT Gewirtz	02/01/2008
Efficacy of parenteral nutrition supplemented with glutamine dipeptide to decrease hospital infections in critically ill surgical patients. JPEN. Journal of parenteral and enteral nutrition	CF Estívariz, DP Griffith, M Luo, EE Szeszycki, N Bazargan, N Dave, NM Daignault, GF Bergman, T McNally, CH Battey, CE Furr, L Hao, JG Ramsay, CR Accardi, GA Cotsonis, DP Jones, JR Galloway, TR Ziegler	01/01/2008
Depletion of plasma antioxidants in surgical intensive care unit patients requiring parenteral feeding: effects of parenteral nutrition with or without alanyl-glutamine dipeptide supplementation. Nutrition (Burbank, Los Angeles County, Calif.)	M Luo, C Fernandez-Estivariz, DP Jones, CR Accardi, B Alteheld, N Bazargan, L Hao, DP Griffith, JB Blumberg, JR Galloway, TR Ziegler	01/01/2008