Xiaofeng Yang, PhD, DABR

Research Program

Discovery and Developmental Therapeutics
Phone Number

404-778-8622
Email Address

xyang43@emory.edu

Biography

Xiaofeng Yang, PhD, DABR, is an associate professor and serves as vice chair for medical physics research in the Department of Radiation Oncology at Emory University School of Medicine. Dr. Yang's specialty is in image-guided intervention, multimodality medical imaging, machine learning, as well as image registration and segmentation.

Education

Dr. Yang received his BS, MS and PhD (finished his PhD training and thesis at Emory University) in biomedical engineering from Xi'an Jiaotong University in China. He completed his postdoctoral and medical physics residency training in the Department of Radiation Oncology at Emory University.

Titles & Roles

Associate Professor, Department of Radiation Oncology

Emory University School of Medicine
Vice Chair for Medical Physics Research, Department of Radiation Oncology

Emory University School of Medicine

Professional Memberships

Dr. Yang is an active member of the International Society for Optics and Photonics, the American Association of Physicists in Medicine, American Society of Therapeutic Radiology and Oncology, the Radiological Society of North America as well as the American Brachytherapy Society.

Research

The goal of Dr. Yang's work is to develop novel analytical and computational tools to enhance the role of quantitative imaging in cancer radiotherapy to improve the accuracy and precision of radiation therapy. His research has put emphasis on applying multimodality imaging for cancer radiotherapy with a focus on prostate cancer. His current research projects include image-guided radiotherapy (brachytherapy), MRI-based treatment planning, quantitative imaging biomarker development, advanced image analysis algorithm development and clinical applications. In his laboratory, Dr. Yang enjoys mentoring undergraduate and graduate students, postdoctoral fellows and residents in imaging research.

Dr. Yang has served as a principal investigator of National Institutes of Health (NIH R01), Department of Defense, and institutional pilot grants.

Grants

View Grants

Grant Number	Title
1R01CA272991-01A1	Real-time Volumetric Imaging for Motion Management and Dose Delivery Verification
1R01EB032680-01A1	eXtended Modular ANthropomorphic (XMAN) phantom for Imaging and Treatment Optimization in Radiotherapy.
3R01CA272991-02S1	Personalized Digital Twin for Precise Lung Stereotactic Body Radiation Therapy (SBRT)
5R01CA272991-02	Real-time Volumetric Imaging for Motion Management and Dose Delivery Verification
5R01EB032680-02	eXtended Modular ANthropomorphic (XMAN) phantom for Imaging and Treatment Optimization in Radiotherapy.
5R01EB032680-03	eXtended Modular ANthropomorphic (XMAN) phantom for Imaging and Treatment Optimization in Radiotherapy.

Publications

Title/Journal	Authors	Publication Date
Data-Driven Volumetric Computed Tomography Image Generation From Surface Structures Using a Patient-Specific Deep Leaning Model. International journal of radiation oncology, biology, physics	S Pan, CW Chang, Z Tian, T Wang, M Axente, J Shelton, T Liu, J Roper, X Yang	04/01/2025
Evaluation and failure analysis of four commercial deep learning-based autosegmentation software for abdominal organs at risk. Journal of applied clinical medical physics	M Fan, T Wang, Y Lei, PR Patel, S Dresser, BB Ghavidel, RLJ Qiu, J Zhou, K Luca, O Kayode, JD Bradley, X Yang, J Roper	04/01/2025
T1-contrast enhanced MRI generation from multi-parametric MRI for glioma patients with latent tumor conditioning. Medical physics	Z Eidex, M Safari, RLJ Qiu, DS Yu, HK Shu, H Mao, X Yang	04/01/2025
Unsupervised Bayesian generation of synthetic CT from CBCT using patient-specific score-based prior. Medical physics	J Peng, Y Gao, CW Chang, R Qiu, T Wang, A Kesarwala, K Yang, J Scott, D Yu, X Yang	04/01/2025
Triad: Vision Foundation Model for 3D Magnetic Resonance Imaging. Research square	S Wang, M Safari, Q Li, CW Chang, RL Qiu, J Roper, DS Yu, X Yang	03/10/2025
MRI super-resolution reconstruction using efficient diffusion probabilistic model with residual shifting. ArXiv	M Safari, S Wang, Z Eidex, Q Li, EH Middlebrooks, DS Yu, X Yang	03/03/2025
Automatic medical imaging segmentation via self-supervising large-scale convolutional neural networks. Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology	Y Li, JF Wynne, Y Wu, RLJ Qiu, S Tian, T Wang, PR Patel, DS Yu, X Yang	03/01/2025
A review of artificial intelligence in brachytherapy. Journal of applied clinical medical physics	J Chen, RLJ Qiu, T Wang, S Momin, X Yang	02/27/2025
Improving Lung Stereotactic Body Radiation Therapy Dose Conformity Using a Simple Noncoplanar Volumetric Modulated Arc Therapy Technique. Practical radiation oncology	T Kei, K Luca, O Kayode, KA Higgins, JD Bradley, JW Shelton, AB Patel, X Yang, E Schreibmann, J Zhang, AH Kesarwala, J Roper	02/25/2025
A Physics-Informed Deep Learning Model for MRI Brain Motion Correction. ArXiv	M Safari, S Wang, Z Eidex, R Qiu, CW Chang, DS Yu, X Yang	02/13/2025
Self-supervised adversarial diffusion models for fast MRI reconstruction. Medical physics	M Safari, Z Eidex, S Pan, RLJ Qiu, X Yang	02/09/2025
A Comparative Dosimetric Study of Proton and Photon Therapy in Stereotactic Arrhythmia Radioablation for Ventricular Tachycardia. ArXiv	KD Shah, CW Chang, P Patel, S Tian, Y Shao, KA Higgins, Y Wang, J Roper, J Zhou, Z Tian, X Yang	02/04/2025
Respiration-Induced Organ Motion Compensation: A Review. Annals of biomedical engineering	S Wilcox, Z Huang, J Shah, X Yang, Y Chen	02/01/2025
Advancing MRI Reconstruction: A Systematic Review of Deep Learning and Compressed Sensing Integration. ArXiv	M Safari, Z Eidex, CW Chang, RLJ Qiu, X Yang	02/01/2025
Cross-shaped windows transformer with self-supervised pretraining for clinically significant prostate cancer detection in bi-parametric MRI. Medical physics	Y Li, J Wynne, J Wang, RLJ Qiu, J Roper, S Pan, AB Jani, T Liu, PR Patel, H Mao, X Yang	02/01/2025
Deep learning based apparent diffusion coefficient map generation from multi-parametric MR images for patients with diffuse gliomas. Medical physics	Z Eidex, M Safari, J Wynne, RLJ Qiu, T Wang, D Viar-Hernandez, HK Shu, H Mao, X Yang	02/01/2025
Evaluating the Efficacy and Safety of Stereotactic Arrhythmia Radioablation in Ventricular Tachycardia: A Comprehensive Systematic Review and Meta-Analysis. ArXiv	KD Shah, CW Chang, S Tian, P Patel, R Qiu, J Roper, J Zhou, Z Tian, X Yang	01/31/2025
Exploration of an adaptive proton therapy strategy using CBCT with the concept of digital twins. Physics in medicine and biology	CW Chang, Z Tian, RLJ Qiu, H Scott Mcginnis, D Bohannon, P Patel, Y Wang, DS Yu, SA Patel, J Zhou, X Yang	01/17/2025
Machine learning in image-based outcome prediction after radiotherapy: A review. Journal of applied clinical medical physics	X Yuan, C Ma, M Hu, RLJ Qiu, E Salari, R Martini, X Yang	01/01/2025
Using a patient-specific diffusion model to generate CBCT-based synthetic CTs for CBCT-guided adaptive radiotherapy. Medical physics	X Chen, RLJ Qiu, T Wang, CW Chang, X Chen, JW Shelton, AH Kesarwala, X Yang	01/01/2025
Optimization-Based Image Reconstruction Regularized with Inter-Spectral Structural Similarity for Limited-Angle Dual-Energy Cone-Beam CT. ArXiv	J Peng, T Wang, H Xie, RLJ Qiu, CW Chang, J Roper, DS Yu, X Tang, X Yang	12/18/2024
Photon-Counting CT in Cancer Radiotherapy: Technological Advances and Clinical Benefits. ArXiv	KD Shah, J Zhou, J Roper, A Dhabaan, H Al-Hallaq, A Pourmorteza, X Yang	12/04/2024
Feasibility study of modularized pin ridge filter implementation in proton FLASH planning for liver stereotactic ablative body radiotherapy. Physics in medicine and biology	C Ma, X Yang, J Setianegara, Y Wang, Y Gao, D Yu, P Patel, J Zhou	12/03/2024
Patient-Specific CBCT Synthesis for Real-time Tumor Tracking in Surface-guided Radiotherapy. ArXiv	S Pan, V Su, J Peng, J Li, Y Gao, CW Chang, T Wang, Z Tian, X Yang	11/01/2024
Artificial intelligence-based motion tracking in cancer radiotherapy: A review. Journal of applied clinical medical physics	E Salari, J Wang, JF Wynne, CW Chang, Y Wu, X Yang	11/01/2024
CBCT-based synthetic CT image generation using a diffusion model for CBCT-guided lung radiotherapy. Medical physics	X Chen, RLJ Qiu, J Peng, JW Shelton, CW Chang, X Yang, AH Kesarwala	11/01/2024
Prediction of early recurrence of adult-type diffuse gliomas following radiotherapy using multi-modal magnetic resonance images. Medical physics	E Salari, X Chen, JF Wynne, RLJ Qiu, J Roper, HK Shu, X Yang	11/01/2024
Comprehensive structure-function analysis reveals gain- and loss-of-function mechanisms impacting oncogenic KRAS activity. bioRxiv : the preprint server for biology	JJ Kwon, J Dilly, S Liu, E Kim, Y Bian, S Dharmaiah, TH Tran, KS Kapner, SH Ly, X Yang, D Rabara, TJ Waybright, AO Giacomelli, AL Hong, S Misek, B Wang, A Ravi, JG Doench, R Beroukhim, CT Lemke, KM Haigis, D Esposito, DE Root, DV Nissley, AG Stephen, F McCormick, DK Simanshu, WC Hahn, AJ Aguirre	10/25/2024
Exploring dual energy CT synthesis in CBCT-based adaptive radiotherapy and proton therapy: application of denoising diffusion probabilistic models. Physics in medicine and biology	D Viar-Hernandez, J Manuel Molina-Maza, S Pan, E Salari, CW Chang, Z Eidex, J Zhou, J Antonio Vera-Sanchez, B Rodriguez-Vila, N Malpica, A Torrado-Carvajal, X Yang	10/18/2024
Radiomic Analysis of Treatment Effect for Patients with Radiation Necrosis Treated with Pentoxifylline and Vitamin E. Tomography (Ann Arbor, Mich.)	JS Patel, E Salari, X Chen, J Switchenko, BR Eaton, J Zhong, X Yang, HG Shu, LJ Sudmeier	09/09/2024
CT-based synthetic iodine map generation using conditional denoising diffusion probabilistic model. Medical physics	Y Gao, H Xie, CW Chang, J Peng, S Pan, RLJ Qiu, T Wang, B Ghavidel, J Roper, J Zhou, X Yang	09/01/2024
Diffeomorphic transformer-based abdomen MRI-CT deformable image registration. Medical physics	Y Lei, LA Matkovic, J Roper, T Wang, J Zhou, B Ghavidel, M McDonald, P Patel, X Yang	09/01/2024
Image-domain material decomposition for dual-energy CT using unsupervised learning with data-fidelity loss. Medical physics	J Peng, CW Chang, H Xie, RLJ Qiu, J Roper, T Wang, B Ghavidel, X Tang, X Yang	09/01/2024
CT-based synthetic contrast-enhanced dual-energy CT generation using conditional denoising diffusion probabilistic model. Physics in medicine and biology	Y Gao, RLJ Qiu, H Xie, CW Chang, T Wang, B Ghavidel, J Roper, J Zhou, X Yang	08/02/2024
Full-dose whole-body PET synthesis from low-dose PET using high-efficiency denoising diffusion probabilistic model: PET consistency model. Medical physics	S Pan, E Abouei, J Peng, J Qian, JF Wynne, T Wang, CW Chang, J Roper, JA Nye, H Mao, X Yang	08/01/2024
On the Question of Uncatalyzed CO Insertion into a Hydrazone Double Bond: A Comparative Study Using Different CO Sources and Substrates. The Journal of organic chemistry	D Liu, N Bauer, W Lu, X Yang, B Wang	07/05/2024
MRI-based prostate cancer classification using 3D efficient capsule network. Medical physics	Y Li, J Wynne, J Wang, J Roper, CW Chang, AB Patel, J Shelton, T Liu, H Mao, X Yang	07/01/2024
Author Correction: MRI-only based material mass density and relative stopping power estimation via deep learning for proton therapy: a preliminary study. Scientific reports	Y Gao, CW Chang, S Mandava, R Marants, JE Scholey, M Goette, Y Lei, H Mao, JD Bradley, T Liu, J Zhou, A Sudhyadhom, X Yang	06/25/2024
Unsupervised Bayesian Generation of Synthetic CT from CBCT Using Patient-Specific Score-Based Prior. ArXiv	J Peng, Y Gao, CW Chang, R Qiu, T Wang, A Kesarwala, K Yang, J Scott, D Yu, X Yang	06/21/2024
High-resolution 3T to 7T ADC map synthesis with a hybrid CNN-transformer model. Medical physics	Z Eidex, J Wang, M Safari, E Elder, J Wynne, T Wang, HK Shu, H Mao, X Yang	06/01/2024
Cardiac MRI segmentation using shifted-window multilayer perceptron mixer networks. Physics in medicine and biology	E Abouei, S Pan, M Hu, AH Kesarwala, RLJ Qiu, J Zhou, J Roper, X Yang	05/30/2024
Unsupervised MRI motion artifact disentanglement: introducing MAUDGAN. Physics in medicine and biology	M Safari, X Yang, CW Chang, RLJ Qiu, A Fatemi, L Archambault	05/30/2024
MRI-only based material mass density and relative stopping power estimation via deep learning for proton therapy: a preliminary study. Scientific reports	Y Gao, CW Chang, S Mandava, R Marants, JE Scholey, M Goette, Y Lei, H Mao, JD Bradley, T Liu, J Zhou, A Sudhyadhom, X Yang	05/15/2024
Diffeomorphic Transformer-based Abdomen MRI-CT Deformable Image Registration. ArXiv	Y Lei, LA Matkovic, J Roper, T Wang, J Zhou, B Ghavidel, M McDonald, P Patel, X Yang	05/04/2024
Advancing medical imaging with language models: featuring a spotlight on ChatGPT. Physics in medicine and biology	M Hu, J Qian, S Pan, Y Li, RLJ Qiu, X Yang	05/03/2024
NRG Oncology Assessment of Artificial Intelligence Deep Learning-Based Auto-segmentation for Radiation Therapy: Current Developments, Clinical Considerations, and Future Directions. International journal of radiation oncology, biology, physics	Y Rong, Q Chen, Y Fu, X Yang, HA Al-Hallaq, QJ Wu, L Yuan, Y Xiao, B Cai, K Latifi, SH Benedict, JC Buchsbaum, XS Qi	05/01/2024
A retrospective study on the investigation of potential dosimetric benefits of online adaptive proton therapy for head and neck cancer. Journal of applied clinical medical physics	CW Chang, D Bohannon, Z Tian, Y Wang, MW Mcdonald, DS Yu, T Liu, J Zhou, X Yang	05/01/2024
Fast MRI Reconstruction Using Deep Learning-based Compressed Sensing: A Systematic Review. ArXiv	M Safari, Z Eidex, CW Chang, RLJ Qiu, X Yang	04/30/2024
Take CT, get PET free: AI-powered breakthrough in lung cancer diagnosis and prognosis. Cell reports. Medicine	T Wang, X Yang	04/16/2024
Hemodynamic property incorporated brain tumor segmentation by deep learning and density-based analysis of dynamic susceptibility contrast-enhanced magnetic resonance imaging (MRI). Quantitative imaging in medicine and surgery	L Tang, T Wu, R Hu, Q Gu, X Yang, H Mao	04/03/2024
Total scalp irradiation: A study comparing multiple types of bolus and VMAT optimization techniques. Journal of applied clinical medical physics	TM Davis, K Luca, LJ Sudmeier, ZS Buchwald, MK Khan, X Yang, E Schreibmann, J Zhang, J Roper	04/01/2024
MRI motion artifact reduction using a conditional diffusion probabilistic model (MAR-CDPM). Medical physics	M Safari, X Yang, A Fatemi, L Archambault	04/01/2024
Streamlined pin-ridge-filter design for single-energy proton FLASH planning. Medical physics	C Ma, J Zhou, CW Chang, Y Wang, PR Patel, DS Yu, S Tian, X Yang	04/01/2024
Synthetic CT generation from MRI using 3D transformer-based denoising diffusion model. Medical physics	S Pan, E Abouei, J Wynne, CW Chang, T Wang, RLJ Qiu, Y Li, J Peng, J Roper, P Patel, DS Yu, H Mao, X Yang	04/01/2024
Modulation of Dendritic Cell Function via Nanoparticle-Induced Cytosolic Calcium Changes. ACS nano	Z Cao, X Yang, W Yang, F Chen, W Jiang, S Zhan, F Jiang, J Li, C Ye, L Lang, S Zhang, Z Feng, X Lai, Y Liu, L Mao, H Cai, Y Teng, J Xie	03/12/2024
Intraoperative radiation therapy with 50 kV x-rays: A multi-institutional review. Journal of applied clinical medical physics	A Sethi, S Gros, P Brodin, B Ghavidel, X Chai, M Popovic, WA Tomé, S Trichter, X Yang, H Zhang, V Uhl	03/01/2024
CBCT-Based synthetic CT image generation using conditional denoising diffusion probabilistic model. Medical physics	J Peng, RLJ Qiu, JF Wynne, CW Chang, S Pan, T Wang, J Roper, T Liu, PR Patel, DS Yu, X Yang	03/01/2024
Deformable lung 4DCT image registration via landmark-driven cycle network. Medical physics	L Matkovic, Y Lei, Y Fu, T Wang, AH Kesarwala, M Axente, J Roper, K Higgins, JD Bradley, T Liu, X Yang	03/01/2024
Robust explanation supervision for false positive reduction in pulmonary nodule detection. Medical physics	Q Zhao, CW Chang, X Yang, L Zhao	03/01/2024
Segmentation of carotid artery vessel wall and diagnosis of carotid atherosclerosis on black blood magnetic resonance imaging with multi-task learning. Medical physics	J Wu, J Xin, X Yang, LA Matkovic, X Zhao, N Zheng, R Li	03/01/2024
SAMHD1 expression contributes to doxorubicin resistance and predicts survival outcomes in diffuse large B-cell lymphoma patients. NAR cancer	W Daddacha, D Monroe, AJ Schlafstein, AE Withers, EB Thompson, D Danelia, NC Luong, F Sesay, SK Rath, ER Usoro, ME Essien, AT Jung, JG Jiang, J Hu, B Mahboubi, A Williams, JE Steinbeck, X Yang, ZS Buchwald, WS Dynan, JM Switchenko, B Kim, MK Khan, DL Jaye, DS Yu	03/01/2024
High-resolution MRI synthesis using a data-driven framework with denoising diffusion probabilistic modeling. Physics in medicine and biology	CW Chang, J Peng, M Safari, E Salari, S Pan, J Roper, RLJ Qiu, Y Gao, HK Shu, H Mao, X Yang	02/05/2024
Deep learning in MRI-guided radiation therapy: A systematic review. Journal of applied clinical medical physics	Z Eidex, Y Ding, J Wang, E Abouei, RLJ Qiu, T Liu, T Wang, X Yang	02/01/2024
Deep learning-based synthetic dose-weighted LET map generation for intensity modulated proton therapy. Physics in medicine and biology	Y Gao, CW Chang, S Pan, J Peng, C Ma, P Patel, J Roper, J Zhou, X Yang	01/05/2024
MGMT promoter methylation prediction based on multiparametric MRI via vision graph neural network. Journal of medical imaging (Bellingham, Wash.)	M Hu, K Yang, J Wang, RLJ Qiu, J Roper, S Kahn, HK Shu, X Yang	01/01/2024
Deep learning-assisted lesion segmentation in PET/CT imaging: A feasibility study for salvage radiation therapy in prostate cancer. Oncoscience	RLJ Qiu, CW Chang, X Yang	01/01/2024
Evaluating Pareto optimal tradeoffs for hippocampal avoidance whole brain radiotherapy with knowledge-based multicriteria optimization. Medical dosimetry : official journal of the American Association of Medical Dosimetrists	T Gebru, K Luca, J Wolf, O Kayode, X Yang, J Roper, J Zhang	12/01/2023
Denoising magnetic resonance spectroscopy (MRS) data using stacked autoencoder for improving signal-to-noise ratio and speed of MRS. Medical physics	J Wang, B Ji, Y Lei, T Liu, H Mao, X Yang	12/01/2023
Hippocampus substructure segmentation using morphological vision transformer learning. Physics in medicine and biology	Y Lei, Y Ding, RLJ Qiu, T Wang, J Roper, Y Fu, HK Shu, H Mao, X Yang	12/01/2023
Multimodal imaging-based material mass density estimation for proton therapy using supervised deep learning. The British journal of radiology	CW Chang, R Marants, Y Gao, M Goette, JE Scholey, JD Bradley, T Liu, J Zhou, A Sudhyadhom, X Yang	12/01/2023
Streamlined Pin-Ridge-Filter Design for Single-energy Proton FLASH Planning. ArXiv	C Ma, J Zhou, CW Chang, Y Wang, PR Patel, DS Yu, S Tian, X Yang	10/03/2023
Estimating Potential Benefits of Online Adaptive Proton Therapy for Head-and-Neck Cancer: A Retrospective Study. International journal of radiation oncology, biology, physics	CW Chang, D Bohannon, Z Tian, Y Wang, MW McDonald, DS Yu, T Liu, J Zhou, X Yang	10/01/2023
Rapid unpaired CBCT-based synthetic CT for CBCT-guided adaptive radiotherapy. Journal of applied clinical medical physics	JF Wynne, Y Lei, S Pan, T Wang, M Pasha, K Luca, J Roper, P Patel, SA Patel, K Godette, AB Jani, X Yang	10/01/2023
An optimized framework for cone-beam computed tomography-based online evaluation for proton therapy. Medical physics	CW Chang, R Nilsson, S Andersson, D Bohannon, SA Patel, PR Patel, T Liu, X Yang, J Zhou	09/01/2023
Automatic segmentation of neurovascular bundle on mri using deep learning based topological modulated network. Medical physics	Y Lei, T Wang, J Roper, S Tian, P Patel, JD Bradley, AB Jani, T Liu, X Yang	09/01/2023
Deep learning-based fast volumetric imaging using kV and MV projection images for lung cancer radiotherapy: A feasibility study. Medical physics	Y Lei, Z Tian, T Wang, J Roper, H Xie, AH Kesarwala, K Higgins, JD Bradley, T Liu, X Yang	09/01/2023
A novel direction modulated brachytherapy technique for urethra sparing in high-dose-rate brachytherapy of prostate cancer. Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology	M Meftahi, RLJ Qiu, P Patel, WY Song, X Yang	09/01/2023
Plight of CORMs: The unreliability of four commercially available CO-releasing molecules, CORM-2, CORM-3, CORM-A1, and CORM-401, in studying CO biology. Biochemical pharmacology	N Bauer, Z Yuan, X Yang, B Wang	08/01/2023
Prodrugs of sulfide and persulfide species: Implications in their different pharmacological activities. Current opinion in chemical biology	B Yu, X Yang, Z Yuan, B Wang	08/01/2023
Deep learning-based Fast Volumetric Image Generation for Image-guided Proton FLASH Radiotherapy. Research square	CW Chang, Y Lei, T Wang, S Tian, J Roper, L Lin, J Bradley, T Liu, J Zhou, X Yang	07/26/2023
An Integrated Physical Optimization Framework for Proton Stereotactic Body Radiation Therapy FLASH Treatment Planning Allows Dose, Dose Rate, and Linear Energy Transfer Optimization Using Patient-Specific Ridge Filters. International journal of radiation oncology, biology, physics	R Liu, S Charyyev, N Wahl, W Liu, M Kang, J Zhou, X Yang, F Baltazar, M Palkowitsch, K Higgins, W Dynan, J Bradley, L Lin	07/15/2023
Measurement of the time structure of FLASH beams using prompt gamma rays and secondary neutrons as surrogates. Physics in medicine and biology	S Charyyev, R Liu, X Yang, J Zhou, A Dhabaan, WS Dynan, C Oancea, L Lin	07/12/2023
Plan Quality Analysis of Automated Treatment Planning Workflow With Commercial Auto-Segmentation Tools and Clinical Knowledge-Based Planning Models for Prostate Cancer. Cureus	J Adams, K Luca, X Yang, P Patel, A Jani, J Roper, J Zhang	07/01/2023
Hippocampus Substructure Segmentation Using Morphological Vision Transformer Learning. ArXiv	Y Lei, Y Ding, RLJ Qiu, T Wang, J Roper, Y Fu, HK Shu, H Mao, X Yang	06/14/2023
Sensing a CO-Releasing Molecule (CORM) Does Not Equate to Sensing CO: The Case of DPHP and CORM-3. Analytical chemistry	D Liu, X Yang, B Wang	06/13/2023
Ultrasound-Based Grading System for Radiation-Induced Acute Breast Toxicity. Journal of ultrasound in medicine : official journal of the American Institute of Ultrasound in Medicine	J Wang, B Zhou, X Yang, S Tridandapani, J Lin, MA Torres, T Liu	06/01/2023
Lung SBRT treatment planning: a study of VMAT arc selection guided by collision check software. Medical dosimetry : official journal of the American Association of Medical Dosimetrists	T Hamilton, J Zhang, J Wolf, O Kayode, KA Higgins, J Bradley, X Yang, E Schreibmann, J Roper	06/01/2023
Feasibility study of hybrid inverse planning with transmission beams and single-energy spread-out Bragg peaks for proton FLASH radiotherapy. Medical physics	C Ma, X Yang, CW Chang, R Liu, D Bohannon, L Lin, T Liu, S Tian, J Zhou	06/01/2023
Deep learning-based protoacoustic signal denoising for proton range verification. Biomedical physics & engineering express	J Wang, JJ Sohn, Y Lei, W Nie, J Zhou, S Avery, T Liu, X Yang	05/12/2023
2D medical image synthesis using transformer-based denoising diffusion probabilistic model. Physics in medicine and biology	S Pan, T Wang, RLJ Qiu, M Axente, CW Chang, J Peng, AB Patel, J Shelton, SA Patel, J Roper, X Yang	05/05/2023
Data-Driven Volumetric Image Generation from Surface Structures using a Patient-Specific Deep Leaning Model. ArXiv	S Pan, CW Chang, M Axente, T Wang, J Shelton, T Liu, J Roper, X Yang	05/02/2023
Landmark tracking in liver US images using cascade convolutional neural networks with long short-term memory. Measurement science & technology	Y Zhang, X Dai, Z Tian, Y Lei, JF Wynne, P Patel, Y Chen, T Liu, X Yang	05/01/2023
Abdomen CT multi-organ segmentation using token-based MLP-Mixer. Medical physics	S Pan, CW Chang, T Wang, J Wynne, M Hu, Y Lei, T Liu, P Patel, J Roper, X Yang	05/01/2023
Inter-fraction deformable image registration using unsupervised deep learning for CBCT-guided abdominal radiotherapy. Physics in medicine and biology	H Xie, Y Lei, Y Fu, T Wang, J Roper, JD Bradley, P Patel, T Liu, X Yang	04/13/2023
Deep Learning in MRI-guided Radiation Therapy: A Systematic Review. ArXiv	Z Eidex, Y Ding, J Wang, E Abouei, RLJ Qiu, T Liu, T Wang, X Yang	03/30/2023
Mutual leveraging of proximity effects and click chemistry in chemical biology. Medicinal research reviews	R Dong, X Yang, B Wang, X Ji	03/01/2023
Reinforcement learning in medical image analysis: Concepts, applications, challenges, and future directions. Journal of applied clinical medical physics	M Hu, J Zhang, L Matkovic, T Liu, X Yang	02/01/2023
Early in vivo Radiation Damage Quantification for Pediatric Craniospinal Irradiation Using Longitudinal MRI for Intensity Modulated Proton Therapy. Advances in radiation oncology	CW Chang, M Goette, N Kadom, Y Wang, J Wynne, T Wang, T Liu, N Esiashvili, J Zhou, BR Eaton, X Yang	01/01/2023
Editorial: Machine learning-based adaptive radiotherapy treatments: From bench top to bedside. Frontiers in oncology	J Zhang, Y Sheng, J Roper, X Yang	01/01/2023
Lesion segmentation on ¹⁸F-fluciclovine PET/CT images using deep learning. Frontiers in oncology	T Wang, Y Lei, E Schreibmann, J Roper, T Liu, DM Schuster, AB Jani, X Yang	01/01/2023
Single energy CT-based mass density and relative stopping power estimation for proton therapy using deep learning method. Frontiers in oncology	Y Gao, CW Chang, J Roper, M Axente, Y Lei, S Pan, JD Bradley, J Zhou, T Liu, X Yang	01/01/2023
Automated lung tumor delineation on positron emission tomography/computed tomography via a hybrid regional network. Medical physics	Y Lei, T Wang, JJ Jeong, J Janopaul-Naylor, AH Kesarwala, J Roper, S Tian, JD Bradley, T Liu, K Higgins, X Yang	01/01/2023
Ultrasound Histogram Assessment of Acute Breast Toxicity After Breast Cancer Radiation Therapy: A Prospective Longitudinal Study. Ultrasound in medicine & biology	B Zhou, J Wang, X Yang, S Henry, JY Lin, MA Torres, T Liu	01/01/2023
Deformable CT image registration via a dual feasible neural network. Medical physics	Y Lei, Y Fu, Z Tian, T Wang, X Dai, J Roper, DS Yu, M McDonald, JD Bradley, T Liu, J Zhou, X Yang	12/01/2022
Validation of a deep learning-based material estimation model for Monte Carlo dose calculation in proton therapy. Physics in medicine and biology	CW Chang, S Zhou, Y Gao, L Lin, T Liu, JD Bradley, T Zhang, J Zhou, X Yang	10/19/2022
Male pelvic multi-organ segmentation using token-based transformer Vnet. Physics in medicine and biology	S Pan, Y Lei, T Wang, J Wynne, CW Chang, J Roper, AB Jani, P Patel, JD Bradley, T Liu, X Yang	10/14/2022
A potential revolution in cancer treatment: A topical review of FLASH radiotherapy. Journal of applied clinical medical physics	Y Gao, R Liu, CW Chang, S Charyyev, J Zhou, JD Bradley, T Liu, X Yang	10/01/2022
The viscoelastic characteristics of in-vitro carotid plaque by Kelvin-Voigt fractional derivative modeling. Journal of biomechanics	Y Zhou, Y Song, Z Liu, W Li, Y Guo, LA Matkovic, X Yang, R Ma, M Wan, L Ruan, H Zhang	08/01/2022
MRI-based prostate and dominant lesion segmentation using cascaded scoring convolutional neural network. Medical physics	ZA Eidex, T Wang, Y Lei, M Axente, OO Akin-Akintayo, OAA Ojo, AA Akintayo, J Roper, JD Bradley, T Liu, DM Schuster, X Yang	08/01/2022
Carbon monoxide signaling and soluble guanylyl cyclase: Facts, myths, and intriguing possibilities. Biochemical pharmacology	W Lu, X Yang, B Wang	06/01/2022
Artificial Intelligence in Quantitative Ultrasound Imaging: A Survey. Journal of ultrasound in medicine : official journal of the American Institute of Ultrasound in Medicine	B Zhou, X Yang, WJ Curran, T Liu	06/01/2022
Systematic discovery of mutation-directed neo-protein-protein interactions in cancer. Cell	X Mo, Q Niu, AA Ivanov, YH Tsang, C Tang, C Shu, Q Li, K Qian, A Wahafu, SP Doyle, D Cicka, X Yang, D Fan, MA Reyna, LAD Cooper, CS Moreno, W Zhou, TK Owonikoko, S Lonial, FR Khuri, Y Du, SS Ramalingam, GB Mills, H Fu	05/26/2022
Dual-energy CT based mass density and relative stopping power estimation for proton therapy using physics-informed deep learning. Physics in medicine and biology	CW Chang, Y Gao, T Wang, Y Lei, Q Wang, S Pan, A Sudhyadhom, JD Bradley, T Liu, L Lin, J Zhou, X Yang	05/26/2022
Mutual enhancing learning-based automatic segmentation of CT cardiac substructure. Physics in medicine and biology	S Momin, Y Lei, NS McCall, J Zhang, J Roper, J Harms, S Tian, MS Lloyd, T Liu, JD Bradley, K Higgins, X Yang	05/11/2022
Onboard cone-beam CT-based replan evaluation for head and neck proton therapy. Journal of applied clinical medical physics	A Stanforth, L Lin, JJ Beitler, JR Janopaul-Naylor, CW Chang, RH Press, SA Patel, J Zhao, B Eaton, EE Schreibmann, J Jung, D Bohannon, T Liu, X Yang, MW McDonald, J Zhou	05/01/2022
Automatic inverse treatment planning of Gamma Knife radiosurgery via deep reinforcement learning. Medical physics	Y Liu, C Shen, T Wang, J Zhang, X Yang, T Liu, S Kahn, HK Shu, Z Tian	05/01/2022
Magnetic resonance imaging contrast enhancement synthesis using cascade networks with local supervision. Medical physics	H Xie, Y Lei, T Wang, J Roper, M Axente, JD Bradley, T Liu, X Yang	05/01/2022
Cascaded mutual enhancing networks for brain tumor subregion segmentation in multiparametric MRI. Physics in medicine and biology	S Momin, Y Lei, Z Tian, J Roper, J Lin, S Kahn, HK Shu, J Bradley, T Liu, X Yang	04/11/2022
Technical note: Determining the applicability of a clinical knowledge-based learning model via prospective outlier detection. Medical physics	J Zhang, Y Sheng, J Wolf, O Kayode, J Bradley, Y Ge, QJ Wu, X Yang, T Liu, J Roper	04/01/2022
Review of Machine Learning in Lung Ultrasound in COVID-19 Pandemic. Journal of imaging	J Wang, X Yang, B Zhou, JJ Sohn, J Zhou, JT Jacob, KA Higgins, JD Bradley, T Liu	03/05/2022
Artificial Intelligence in Radiation Therapy. IEEE transactions on radiation and plasma medical sciences	Y Fu, H Zhang, ED Morris, CK Glide-Hurst, S Pai, A Traverso, L Wee, I Hadzic, PI Lønne, C Shen, T Liu, X Yang	02/01/2022
Multi-organ auto-delineation in head-and-neck MRI for radiation therapy using regional convolutional neural network. Physics in medicine and biology	X Dai, Y Lei, T Wang, J Zhou, S Rudra, M McDonald, WJ Curran, T Liu, X Yang	01/21/2022
Dosimetric Uncertainties in Dominant Intraprostatic Lesion Simultaneous Boost Using Intensity Modulated Proton Therapy. Advances in radiation oncology	J Zhou, X Yang, CW Chang, S Tian, T Wang, L Lin, Y Wang, JR Janopaul-Naylor, P Patel, JD Demoor, D Bohannon, A Stanforth, B Eaton, MW McDonald, T Liu, SA Patel	01/01/2022
Longitudinal Changes in U.S. Parameters of Neurovascular Bundles Suggest Mechanism for Radiation-Induced Erectile Dysfunction. Advances in radiation oncology	JR Janopaul-Naylor, T Liu, B Zhou, X Yang, NS McCall, PR Patel, A Mehta, SG Nour, AB Jani	01/01/2022
Enhanced cardiac substructure sparing through knowledge-based treatment planning for non-small cell lung cancer radiotherapy. Frontiers in oncology	S Momin, J Wolf, J Roper, Y Lei, T Liu, JD Bradley, K Higgins, X Yang, J Zhang	01/01/2022
Synthesizing high-resolution magnetic resonance imaging using parallel cycle-consistent generative adversarial networks for fast magnetic resonance imaging. Medical physics	H Xie, Y Lei, T Wang, J Roper, AH Dhabaan, JD Bradley, T Liu, H Mao, X Yang	01/01/2022
Learning-based synthetic dual energy CT imaging from single energy CT for stopping power ratio calculation in proton radiation therapy. The British journal of radiology	S Charyyev, T Wang, Y Lei, B Ghavidel, JJ Beitler, M McDonald, WJ Curran, T Liu, J Zhou, X Yang	01/01/2022
Prostate and dominant intraprostatic lesion segmentation on PET/CT using cascaded regional-net. Physics in medicine and biology	LA Matkovic, T Wang, Y Lei, OO Akin-Akintayo, OA Abiodun Ojo, AA Akintayo, J Roper, JD Bradley, T Liu, DM Schuster, X Yang	12/07/2021
Deep learning-based motion tracking using ultrasound images. Medical physics	X Dai, Y Lei, J Roper, Y Chen, JD Bradley, WJ Curran, T Liu, X Yang	12/01/2021
MRI classification using semantic random forest with auto-context model. Quantitative imaging in medicine and surgery	Y Lei, T Wang, X Dong, S Tian, Y Liu, H Mao, WJ Curran, HK Shu, T Liu, X Yang	12/01/2021
Catheter position prediction using deep-learning-based multi-atlas registration for high-dose rate prostate brachytherapy. Medical physics	Y Lei, T Wang, Y Fu, J Roper, AB Jani, T Liu, P Patel, X Yang	11/01/2021
Lung tumor segmentation in 4D CT images using motion convolutional neural networks. Medical physics	S Momin, Y Lei, Z Tian, T Wang, J Roper, AH Kesarwala, K Higgins, JD Bradley, T Liu, X Yang	11/01/2021
Synthetic CT-aided multiorgan segmentation for CBCT-guided adaptive pancreatic radiotherapy. Medical physics	X Dai, Y Lei, J Wynne, J Janopaul-Naylor, T Wang, J Roper, WJ Curran, T Liu, P Patel, X Yang	11/01/2021
Deep learning-based thoracic CBCT correction with histogram matching. Biomedical physics & engineering express	RLJ Qiu, Y Lei, J Shelton, K Higgins, JD Bradley, WJ Curran, T Liu, AH Kesarwala, X Yang	10/29/2021
Redox and catalase-like activities of four widely used carbon monoxide releasing molecules (CO-RMs). Chemical science	Z Yuan, X Yang, B Wang	10/13/2021
"CO in a pill": Towards oral delivery of carbon monoxide for therapeutic applications. Journal of controlled release : official journal of the Controlled Release Society	X Yang, W Lu, M Wang, C Tan, B Wang	10/10/2021
Automated delineation of head and neck organs at risk using synthetic MRI-aided mask scoring regional convolutional neural network. Medical physics	X Dai, Y Lei, T Wang, J Zhou, J Roper, M McDonald, JJ Beitler, WJ Curran, T Liu, X Yang	10/01/2021
On the Conditioning of Spectral Channelization (Energy Binning) and Its Impact on Multi-Material Decomposition Based Spectral Imaging in Photon-Counting CT. IEEE transactions on bio-medical engineering	Y Ren, H Xie, W Long, X Yang, X Tang	09/01/2021
Knowledge-based radiation treatment planning: A data-driven method survey. Journal of applied clinical medical physics	S Momin, Y Fu, Y Lei, J Roper, JD Bradley, WJ Curran, T Liu, X Yang	08/01/2021
Fully automated segmentation of brain tumor from multiparametric MRI using 3D context deep supervised U-Net. Medical physics	M Lin, S Momin, Y Lei, H Wang, WJ Curran, T Liu, X Yang	08/01/2021
High through-plane resolution CT imaging with self-supervised deep learning. Physics in medicine and biology	H Xie, Y Lei, T Wang, Z Tian, J Roper, JD Bradley, WJ Curran, X Tang, T Liu, X Yang	07/14/2021
Artificial intelligence in tumor subregion analysis based on medical imaging: A review. Journal of applied clinical medical physics	M Lin, JF Wynne, B Zhou, T Wang, Y Lei, WJ Curran, T Liu, X Yang	07/01/2021
Self-supervised learning for accelerated 3D high-resolution ultrasound imaging. Medical physics	X Dai, Y Lei, T Wang, M Axente, D Xu, P Patel, AB Jani, WJ Curran, T Liu, X Yang	07/01/2021
Learning-based dose prediction for pancreatic stereotactic body radiation therapy using dual pyramid adversarial network. Physics in medicine and biology	S Momin, Y Lei, T Wang, J Zhang, J Roper, JD Bradley, WJ Curran, P Patel, T Liu, X Yang	06/21/2021
Nature's marvels endowed in gaseous molecules I: Carbon monoxide and its physiological and therapeutic roles. Acta pharmaceutica Sinica. B	X Yang, W Lu, CP Hopper, B Ke, B Wang	06/01/2021
Automatic quantification of myocardium and pericardial fat from coronary computed tomography angiography: a multicenter study. European radiology	X He, BJ Guo, Y Lei, T Wang, WJ Curran, T Liu, LJ Zhang, X Yang	06/01/2021
Automatic delineation of cardiac substructures using a region-based fully convolutional network. Medical physics	J Harms, Y Lei, S Tian, NS McCall, KA Higgins, JD Bradley, WJ Curran, T Liu, X Yang	06/01/2021
Male pelvic multi-organ segmentation on transrectal ultrasound using anchor-free mask CNN. Medical physics	Y Lei, T Wang, J Roper, AB Jani, SA Patel, WJ Curran, P Patel, T Liu, X Yang	06/01/2021
Head and neck multi-organ segmentation on dual-energy CT using dual pyramid convolutional neural networks. Physics in medicine and biology	T Wang, Y Lei, J Roper, B Ghavidel, JJ Beitler, M McDonald, WJ Curran, T Liu, X Yang	05/20/2021
Echocardiographic image multi-structure segmentation using Cardiac-SegNet. Medical physics	Y Lei, Y Fu, J Roper, K Higgins, JD Bradley, WJ Curran, T Liu, X Yang	05/01/2021
A review of deep learning based methods for medical image multi-organ segmentation. Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB)	Y Fu, Y Lei, T Wang, WJ Curran, T Liu, X Yang	05/01/2021
High-frequency ultrasound in clinical dermatology: a review. The ultrasound journal	J Levy, DL Barrett, N Harris, JJ Jeong, X Yang, SC Chen	04/20/2021
Male pelvic CT multi-organ segmentation using synthetic MRI-aided dual pyramid networks. Physics in medicine and biology	Y Lei, T Wang, S Tian, Y Fu, P Patel, AB Jani, WJ Curran, T Liu, X Yang	04/16/2021
Synthetic dual-energy CT for MRI-only based proton therapy treatment planning using label-GAN. Physics in medicine and biology	R Liu, Y Lei, T Wang, J Zhou, J Roper, L Lin, MW McDonald, JD Bradley, WJ Curran, T Liu, X Yang	03/09/2021
Principal Component Analysis in Projection and Image Domains-Another Form of Spectral Imaging in Photon-Counting CT. IEEE transactions on bio-medical engineering	H Xie, Y Ren, W Long, X Yang, X Tang	03/01/2021
Thyroid gland delineation in noncontrast-enhanced CTs using deep convolutional neural networks. Physics in medicine and biology	X He, BJ Guo, Y Lei, S Tian, T Wang, WJ Curran, LJ Zhang, T Liu, X Yang	02/16/2021
Head-and-neck organs-at-risk auto-delineation using dual pyramid networks for CBCT-guided adaptive radiotherapy. Physics in medicine and biology	X Dai, Y Lei, T Wang, AH Dhabaan, M McDonald, JJ Beitler, WJ Curran, J Zhou, T Liu, X Yang	02/11/2021
A novel proton counting detector and method for the validation of tissue and implant material maps for Monte Carlo dose calculation. Physics in medicine and biology	S Charyyev, CW Chang, J Harms, C Oancea, ST Yoon, X Yang, T Zhang, J Zhou, L Lin	02/02/2021
Implementation of a Knowledge-Based Treatment Planning Model for Cardiac-Sparing Lung Radiation Therapy. Advances in radiation oncology	J Harms, J Zhang, O Kayode, J Wolf, S Tian, N McCall, KA Higgins, R Castillo, X Yang	01/01/2021
Carbon Monoxide as a Therapeutic for Airway Diseases: Contrast and Comparison of Various CO Delivery Modalities. Current topics in medicinal chemistry	R Tripathi, X Yang, SW Ryter, B Wang	01/01/2021
Learning-Based Stopping Power Mapping on Dual-Energy CT for Proton Radiation Therapy. International journal of particle therapy	T Wang, Y Lei, J Harms, B Ghavidel, L Lin, JJ Beitler, M McDonald, WJ Curran, T Liu, J Zhou, X Yang	01/01/2021
A review on medical imaging synthesis using deep learning and its clinical applications. Journal of applied clinical medical physics	T Wang, Y Lei, Y Fu, JF Wynne, WJ Curran, T Liu, X Yang	01/01/2021
Biomechanically constrained non-rigid MR-TRUS prostate registration using deep learning based 3D point cloud matching. Medical image analysis	Y Fu, Y Lei, T Wang, P Patel, AB Jani, H Mao, WJ Curran, T Liu, X Yang	01/01/2021
Breast tumor segmentation in 3D automatic breast ultrasound using Mask scoring R-CNN. Medical physics	Y Lei, X He, J Yao, T Wang, L Wang, W Li, WJ Curran, T Liu, D Xu, X Yang	01/01/2021
Deformable MR-CBCT prostate registration using biomechanically constrained deep learning networks. Medical physics	Y Fu, T Wang, Y Lei, P Patel, AB Jani, WJ Curran, T Liu, X Yang	01/01/2021
Deep learning-based real-time volumetric imaging for lung stereotactic body radiation therapy: a proof of concept study. Physics in medicine and biology	Y Lei, Z Tian, T Wang, K Higgins, JD Bradley, WJ Curran, T Liu, X Yang	12/18/2020
Multimodal MRI synthesis using unified generative adversarial networks. Medical physics	X Dai, Y Lei, Y Fu, WJ Curran, T Liu, H Mao, X Yang	12/01/2020
Intensity non-uniformity correction in MR imaging using residual cycle generative adversarial network. Physics in medicine and biology	X Dai, Y Lei, Y Liu, T Wang, L Ren, WJ Curran, P Patel, T Liu, X Yang	11/27/2020
Prodrugs of Persulfides, Sulfur Dioxide, and Carbon Disulfide: Important Tools for Studying Sulfur Signaling at Various Oxidation States. Antioxidants & redox signaling	B Yu, Z Yuan, X Yang, B Wang	11/10/2020
Ultrasound Elastography for Lung Disease Assessment. IEEE transactions on ultrasonics, ferroelectrics, and frequency control	B Zhou, X Yang, X Zhang, WJ Curran, T Liu	11/01/2020
Thyroid gland delineation in noncontrast-enhanced CT using deep convolutional neural networks. Physics in medicine and biology	X He, B Guo, Y Lei, S Tian, T Wang, WJ Curran, L Zhang, T Liu, X Yang	10/28/2020
Deep learning in medical image registration: a review. Physics in medicine and biology	Y Fu, Y Lei, T Wang, WJ Curran, T Liu, X Yang	10/22/2020
Automatic multi-needle localization in ultrasound images using large margin mask RCNN for ultrasound-guided prostate brachytherapy. Physics in medicine and biology	Y Zhang, Z Tian, Y Lei, T Wang, P Patel, AB Jani, WJ Curran, T Liu, X Yang	10/09/2020
Brain tumor segmentation using 3D Mask R-CNN for dynamic susceptibility contrast enhanced perfusion imaging. Physics in medicine and biology	J Jeong, Y Lei, S Kahn, T Liu, WJ Curran, HK Shu, H Mao, X Yang	09/18/2020
Automatic multi-catheter detection using deeply supervised convolutional neural network in MRI-guided HDR prostate brachytherapy. Medical physics	X Dai, Y Lei, Y Zhang, RLJ Qiu, T Wang, SA Dresser, WJ Curran, P Patel, T Liu, X Yang	09/01/2020
Cone-beam CT-derived relative stopping power map generation via deep learning for proton radiotherapy. Medical physics	J Harms, Y Lei, T Wang, M McDonald, B Ghavidel, W Stokes, WJ Curran, J Zhou, T Liu, X Yang	09/01/2020
CT-based multi-organ segmentation using a 3D self-attention U-net network for pancreatic radiotherapy. Medical physics	Y Liu, Y Lei, Y Fu, T Wang, X Tang, X Jiang, WJ Curran, T Liu, P Patel, X Yang	09/01/2020
Head and neck multi-organ auto-segmentation on CT images aided by synthetic MRI. Medical physics	Y Liu, Y Lei, Y Fu, T Wang, J Zhou, X Jiang, M McDonald, JJ Beitler, WJ Curran, T Liu, X Yang	09/01/2020
Pelvic multi-organ segmentation on cone-beam CT for prostate adaptive radiotherapy. Medical physics	Y Fu, Y Lei, T Wang, S Tian, P Patel, AB Jani, WJ Curran, T Liu, X Yang	08/01/2020
Machine learning in quantitative PET: A review of attenuation correction and low-count image reconstruction methods. Physica medica : PM : an international journal devoted to the applications of physics to medicine and biology : official journal of the Italian Association of Biomedical Physics (AIFB)	T Wang, Y Lei, Y Fu, WJ Curran, T Liu, JA Nye, X Yang	08/01/2020
Multi-Needle Detection in 3D Ultrasound Images Using Unsupervised Order-Graph Regularized Sparse Dictionary Learning. IEEE transactions on medical imaging	Y Zhang, X He, Z Tian, JJ Jeong, Y Lei, T Wang, Q Zeng, AB Jani, WJ Curran, P Patel, T Liu, X Yang	07/01/2020
Multi-needle Localization with Attention U-Net in US-guided HDR Prostate Brachytherapy. Medical physics	Y Zhang, Y Lei, RLJ Qiu, T Wang, H Wang, AB Jani, WJ Curran, P Patel, T Liu, X Yang	07/01/2020
Carbon monoxide: An emerging therapy for acute kidney injury. Medicinal research reviews	X Yang, M de Caestecker, LE Otterbein, B Wang	07/01/2020
Label-driven magnetic resonance imaging (MRI)-transrectal ultrasound (TRUS) registration using weakly supervised learning for MRI-guided prostate radiotherapy. Physics in medicine and biology	Q Zeng, Y Fu, Z Tian, Y Lei, Y Zhang, T Wang, H Mao, T Liu, WJ Curran, AB Jani, P Patel, X Yang	06/26/2020
A learning-based automatic segmentation and quantification method on left ventricle in gated myocardial perfusion SPECT imaging: A feasibility study. Journal of nuclear cardiology : official publication of the American Society of Nuclear Cardiology	T Wang, Y Lei, H Tang, Z He, R Castillo, C Wang, D Li, K Higgins, T Liu, WJ Curran, W Zhou, X Yang	06/01/2020
CBCT-based synthetic CT generation using deep-attention cycleGAN for pancreatic adaptive radiotherapy. Medical physics	Y Liu, Y Lei, T Wang, Y Fu, X Tang, WJ Curran, T Liu, P Patel, X Yang	06/01/2020
Automatic segmentation and quantification of epicardial adipose tissue from coronary computed tomography angiography. Physics in medicine and biology	X He, BJ Guo, Y Lei, T Wang, Y Fu, WJ Curran, LJ Zhang, T Liu, X Yang	05/11/2020
High quality proton portal imaging using deep learning for proton radiation therapy: a phantom study. Biomedical physics & engineering express	S Charyyev, Y Lei, J Harms, B Eaton, M McDonald, WJ Curran, T Liu, J Zhou, R Zhang, X Yang	04/27/2020
4D-CT deformable image registration using multiscale unsupervised deep learning. Physics in medicine and biology	Y Lei, Y Fu, T Wang, Y Liu, P Patel, WJ Curran, T Liu, X Yang	04/20/2020
A preliminary study on a multiresolution-level inverse planning approach for Gamma Knife radiosurgery. Medical physics	Z Tian, X Yang, M Giles, T Wang, H Gao, E Butker, T Liu, S Kahn	04/01/2020
Automated left ventricular myocardium segmentation using 3D deeply supervised attention U-net for coronary computed tomography angiography; CT myocardium segmentation. Medical physics	B Jun Guo, X He, Y Lei, J Harms, T Wang, WJ Curran, T Liu, L Jiang Zhang, X Yang	04/01/2020
LungRegNet: An unsupervised deformable image registration method for 4D-CT lung. Medical physics	Y Fu, Y Lei, T Wang, K Higgins, JD Bradley, WJ Curran, T Liu, X Yang	04/01/2020
Deep learning-based attenuation correction in the absence of structural information for whole-body positron emission tomography imaging. Physics in medicine and biology	X Dong, Y Lei, T Wang, K Higgins, T Liu, WJ Curran, H Mao, JA Nye, X Yang	03/02/2020
A planning study of focal dose escalations to multiparametric MRI-defined dominant intraprostatic lesions in prostate proton radiation therapy. The British journal of radiology	T Wang, J Zhou, S Tian, Y Wang, P Patel, AB Jani, KM Langen, WJ Curran, T Liu, X Yang	03/01/2020
Male pelvic multi-organ segmentation aided by CBCT-based synthetic MRI. Physics in medicine and biology	Y Lei, T Wang, S Tian, X Dong, AB Jani, D Schuster, WJ Curran, P Patel, T Liu, X Yang	02/04/2020
Impact of Regional Nodal Irradiation and Hypofractionated Whole-Breast Radiation on Long-Term Breast Retraction and Poor Cosmetic Outcome in Breast Cancer Survivors. Clinical breast cancer	D Wang, X Yang, J He, J Lin, S Henry, G Brown, L Chu, KD Godette, ST Kahn, T Liu, MA Torres	02/01/2020
CT prostate segmentation based on synthetic MRI-aided deep attention fully convolution network. Medical physics	Y Lei, X Dong, Z Tian, Y Liu, S Tian, T Wang, X Jiang, P Patel, AB Jani, H Mao, WJ Curran, T Liu, X Yang	02/01/2020
Radiomics analysis using contrast-enhanced CT for preoperative prediction of occult peritoneal metastasis in advanced gastric cancer. European radiology	S Liu, J He, S Liu, C Ji, W Guan, L Chen, Y Guan, X Yang, Z Zhou	01/01/2020
Strain elastography as an early predictor of long-term prognosis in patients with locally advanced cervical cancers treated with concurrent chemoradiotherapy. European radiology	Y Xu, L Zhu, L Zhu, H Wang, T Ru, B Liu, J He, S Tian, Z Zhou, X Yang	01/01/2020
Analytical Low-Dose CBCT Reconstruction Using Non-local Total Variation Regularization for Image Guided Radiation Therapy. Frontiers in oncology	JJ Sohn, C Kim, DH Kim, SR Lee, J Zhou, X Yang, T Liu	01/01/2020
Full axillary lymph node dissection and increased breast epidermal thickness 1 year after radiation therapy for breast cancer. Journal of surgical oncology	JY Lin, X Yang, M Serra, AH Miller, KD Godette, ST Kahn, S Henry, G Brown, T Liu, MA Torres	12/01/2019
Dose evaluation of MRI-based synthetic CT generated using a machine learning method for prostate cancer radiotherapy. Medical dosimetry : official journal of the American Association of Medical Dosimetrists	G Shafai-Erfani, T Wang, Y Lei, S Tian, P Patel, AB Jani, WJ Curran, T Liu, X Yang	12/01/2019
Dosimetric study on learning-based cone-beam CT correction in adaptive radiation therapy. Medical dosimetry : official journal of the American Association of Medical Dosimetrists	T Wang, Y Lei, N Manohar, S Tian, AB Jani, HK Shu, K Higgins, A Dhabaan, P Patel, X Tang, T Liu, WJ Curran, X Yang	12/01/2019
Deep morphology aided diagnosis network for segmentation of carotid artery vessel wall and diagnosis of carotid atherosclerosis on black-blood vessel wall MRI. Medical physics	J Wu, J Xin, X Yang, J Sun, D Xu, N Zheng, C Yuan	12/01/2019
Synthetic MRI-aided multi-organ segmentation on male pelvic CT using cycle consistent deep attention network. Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology	X Dong, Y Lei, S Tian, T Wang, P Patel, WJ Curran, AB Jani, T Liu, X Yang	12/01/2019
Synthetic CT generation from non-attenuation corrected PET images for whole-body PET imaging. Physics in medicine and biology	X Dong, T Wang, Y Lei, K Higgins, T Liu, WJ Curran, H Mao, JA Nye, X Yang	11/04/2019
Whole-body PET estimation from low count statistics using cycle-consistent generative adversarial networks. Physics in medicine and biology	Y Lei, X Dong, T Wang, K Higgins, T Liu, WJ Curran, H Mao, JA Nye, X Yang	11/04/2019
Evaluation of a deep learning-based pelvic synthetic CT generation technique for MRI-based prostate proton treatment planning. Physics in medicine and biology	Y Liu, Y Lei, Y Wang, G Shafai-Erfani, T Wang, S Tian, P Patel, AB Jani, M McDonald, WJ Curran, T Liu, J Zhou, X Yang	10/21/2019
Deep learning-based image quality improvement for low-dose computed tomography simulation in radiation therapy. Journal of medical imaging (Bellingham, Wash.)	T Wang, Y Lei, Z Tian, X Dong, Y Liu, X Jiang, WJ Curran, T Liu, HK Shu, X Yang	10/01/2019
MRI-based treatment planning for brain stereotactic radiosurgery: Dosimetric validation of a learning-based pseudo-CT generation method. Medical dosimetry : official journal of the American Association of Medical Dosimetrists	T Wang, N Manohar, Y Lei, A Dhabaan, HK Shu, T Liu, WJ Curran, X Yang	09/01/2019
Paired cycle-GAN-based image correction for quantitative cone-beam computed tomography. Medical physics	J Harms, Y Lei, T Wang, R Zhang, J Zhou, X Tang, WJ Curran, T Liu, X Yang	09/01/2019
MRI-only based synthetic CT generation using dense cycle consistent generative adversarial networks. Medical physics	Y Lei, J Harms, T Wang, Y Liu, HK Shu, AB Jani, WJ Curran, H Mao, T Liu, X Yang	08/01/2019
MRI-based treatment planning for liver stereotactic body radiotherapy: validation of a deep learning-based synthetic CT generation method. The British journal of radiology	Y Liu, Y Lei, T Wang, O Kayode, S Tian, T Liu, P Patel, WJ Curran, L Ren, X Yang	08/01/2019
MRI-based treatment planning for proton radiotherapy: dosimetric validation of a deep learning-based liver synthetic CT generation method. Physics in medicine and biology	Y Liu, Y Lei, Y Wang, T Wang, L Ren, L Lin, M McDonald, WJ Curran, T Liu, J Zhou, X Yang	07/16/2019
Learning-based automatic segmentation of arteriovenous malformations on contrast CT images in brain stereotactic radiosurgery. Medical physics	T Wang, Y Lei, S Tian, X Jiang, J Zhou, T Liu, S Dresser, WJ Curran, HK Shu, X Yang	07/01/2019
Ultrasound prostate segmentation based on multidirectional deeply supervised V-Net. Medical physics	Y Lei, S Tian, X He, T Wang, B Wang, P Patel, AB Jani, H Mao, WJ Curran, T Liu, X Yang	07/01/2019
Machine-learning based classification of glioblastoma using delta-radiomic features derived from dynamic susceptibility contrast enhanced magnetic resonance images: Introduction. Quantitative imaging in medicine and surgery	J Jeong, L Wang, B Ji, Y Lei, A Ali, T Liu, WJ Curran, H Mao, X Yang	07/01/2019
Automatic multiorgan segmentation in thorax CT images using U-net-GAN. Medical physics	X Dong, Y Lei, T Wang, M Thomas, L Tang, WJ Curran, T Liu, X Yang	05/01/2019
Multiparametric MRI-guided dose boost to dominant intraprostatic lesions in CT-based High-dose-rate prostate brachytherapy. The British journal of radiology	T Wang, RH Press, M Giles, AB Jani, P Rossi, Y Lei, WJ Curran, P Patel, T Liu, X Yang	05/01/2019
MRI-based synthetic CT generation using semantic random forest with iterative refinement. Physics in medicine and biology	Y Lei, J Harms, T Wang, S Tian, J Zhou, HK Shu, J Zhong, H Mao, WJ Curran, T Liu, X Yang	04/05/2019
Deeply supervised 3D fully convolutional networks with group dilated convolution for automatic MRI prostate segmentation. Medical physics	B Wang, Y Lei, S Tian, T Wang, Y Liu, P Patel, AB Jani, H Mao, WJ Curran, T Liu, X Yang	04/01/2019
Optimal virtual monoenergetic image in "TwinBeam" dual-energy CT for organs-at-risk delineation based on contrast-noise-ratio in head-and-neck radiotherapy. Journal of applied clinical medical physics	T Wang, BB Ghavidel, JJ Beitler, X Tang, Y Lei, WJ Curran, T Liu, X Yang	02/01/2019
Learning-based CBCT correction using alternating random forest based on auto-context model. Medical physics	Y Lei, X Tang, K Higgins, J Lin, J Jeong, T Liu, A Dhabaan, T Wang, X Dong, R Press, WJ Curran, X Yang	02/01/2019
MRI-based attenuation correction for brain PET/MRI based on anatomic signature and machine learning. Physics in medicine and biology	X Yang, T Wang, Y Lei, K Higgins, T Liu, H Shim, WJ Curran, H Mao, JA Nye	01/07/2019
Machine Learning Assisted MRI Characterization for Diagnosis of Neonatal Acute Bilirubin Encephalopathy. Frontiers in neurology	Z Liu, B Ji, Y Zhang, G Cui, L Liu, S Man, L Ding, X Yang, H Mao, L Wang	01/01/2019
MRI-Based Proton Treatment Planning for Base of Skull Tumors. International journal of particle therapy	G Shafai-Erfani, Y Lei, Y Liu, Y Wang, T Wang, J Zhong, T Liu, M McDonald, WJ Curran, J Zhou, HK Shu, X Yang	01/01/2019
Revealing hemodynamic heterogeneity of gliomas based on signal profile features of dynamic susceptibility contrast-enhanced MRI. NeuroImage. Clinical	B Ji, S Wang, Z Liu, BD Weinberg, X Yang, T Liu, L Wang, H Mao	01/01/2019
Content-oriented sparse representation (COSR) for CT denoising with preservation of texture and edge. Medical physics	H Xie, T Niu, S Tang, X Yang, N Kadom, X Tang	11/01/2018
MRI-based pseudo CT synthesis using anatomical signature and alternating random forest with iterative refinement model. Journal of medical imaging (Bellingham, Wash.)	Y Lei, JJ Jeong, T Wang, HK Shu, P Patel, S Tian, T Liu, H Shim, H Mao, AB Jani, WJ Curran, X Yang	10/01/2018
Texture Analysis as Imaging Biomarker for recurrence in advanced cervical cancer treated with CCRT. Scientific reports	J Meng, S Liu, L Zhu, L Zhu, H Wang, L Xie, Y Guan, J He, X Yang, Z Zhou	07/30/2018
Magnetic resonance imaging-based pseudo computed tomography using anatomic signature and joint dictionary learning. Journal of medical imaging (Bellingham, Wash.)	Y Lei, HK Shu, S Tian, JJ Jeong, T Liu, H Shim, H Mao, T Wang, AB Jani, WJ Curran, X Yang	07/01/2018
A Denoising Algorithm for CT Image Using Low-rank Sparse Coding. Proceedings of SPIE--the International Society for Optical Engineering	Y Lei, D Xu, Z Zhou, T Wang, X Dong, T Liu, A Dhabaan, WJ Curran, X Yang	03/01/2018
Early evaluation of radiation-induced parotid damage in patients with nasopharyngeal carcinoma by T2 mapping and mDIXON Quant imaging: initial findings. Radiation oncology (London, England)	N Zhou, C Chu, X Dou, W Chen, J He, J Yan, Z Zhou, X Yang	02/08/2018
Early evaluation of radiation-induced parotid damage with diffusion kurtosis imaging: a preliminary study. Acta radiologica (Stockholm, Sweden : 1987)	N Zhou, W Chen, X Pan, J He, J Yan, Z Zhou, X Yang	02/01/2018
High-resolution CT Image Retrieval Using Sparse Convolutional Neural Network. Proceedings of SPIE--the International Society for Optical Engineering	Y Lei, D Xu, Z Zhou, K Higgins, X Dong, T Liu, H Shim, H Mao, WJ Curran, X Yang	02/01/2018
Improving Image Quality of Cone-Beam CT Using Alternating Regression Forest. Proceedings of SPIE--the International Society for Optical Engineering	Y Lei, X Tang, K Higgins, T Wang, T Liu, A Dhabaan, H Shim, WJ Curran, X Yang	02/01/2018
High-resolution, ultrasound-guided, high-dose-rate, surface brachytherapy for basal cell carcinoma of the skin: A case report. Advances in radiation oncology	S Zhu, X Yang, KM Xu, JJ Jeong, MK Khan	01/01/2018
Ultrasonic histogram assessment of early response to concurrent chemo-radiotherapy in patients with locally advanced cervical cancer: a feasibility study. Clinical imaging	Y Xu, T Ru, L Zhu, B Liu, H Wang, L Zhu, J He, S Liu, Z Zhou, X Yang	01/01/2018
Computation Methods for Biomedical Information Analysis. Journal of healthcare engineering	Y Xia, W Cai, X Yang, S Wang	01/01/2018
Whole-lesion ADC histogram and texture analysis in predicting recurrence of cervical cancer treated with CCRT. Oncotarget	J Meng, L Zhu, L Zhu, L Xie, H Wang, S Liu, J Yan, B Liu, Y Guan, J He, Y Ge, Z Zhou, X Yang	11/03/2017
Histogram analysis of apparent diffusion coefficient for monitoring early response in patients with advanced cervical cancers undergoing concurrent chemo-radiotherapy. Acta radiologica (Stockholm, Sweden : 1987)	J Meng, L Zhu, L Zhu, Y Ge, J He, Z Zhou, X Yang	11/01/2017
Apparent diffusion coefficient histogram analysis can evaluate radiation-induced parotid damage and predict late xerostomia degree in nasopharyngeal carcinoma. Oncotarget	N Zhou, T Guo, H Zheng, X Pan, C Chu, X Dou, M Li, S Liu, L Zhu, B Liu, W Chen, J He, J Yan, Z Zhou, X Yang	09/19/2017
Predictive and prognostic value of intravoxel incoherent motion (IVIM) MR imaging in patients with advanced cervical cancers undergoing concurrent chemo-radiotherapy. Scientific reports	L Zhu, H Wang, L Zhu, J Meng, Y Xu, B Liu, W Chen, J He, Z Zhou, X Yang	09/14/2017
Three-dimensional power Doppler ultrasound in the early assessment of response to concurrent chemo-radiotherapy for advanced cervical cancer. Acta radiologica (Stockholm, Sweden : 1987)	Y Xu, L Zhu, T Ru, H Wang, J He, Z Zhou, X Yang	09/01/2017
Strain elastography imaging for early detection and prediction of tumor response to concurrent chemo-radiotherapy in locally advanced cervical cancer: feasibility study. BMC cancer	Y Xu, L Zhu, B Liu, T Ru, H Wang, J He, S Liu, X Yang, Z Zhou, T Liu	06/19/2017
A Patch-based CBCT Scatter Artifact Correction Using Prior CT. Proceedings of SPIE--the International Society for Optical Engineering	X Yang, T Liu, X Dong, X Tang, E Elder, WJ Curran, A Dhabaan	02/01/2017
Image-based Metal Artifact Reduction in X-ray Computed Tomography utilizing Local Anatomical Similarity. Proceedings of SPIE--the International Society for Optical Engineering	X Dong, X Yang, J Rosenfield, E Elder, A Dhabaan	02/01/2017
Pseudo CT Estimation from MRI Using Patch-based Random Forest. Proceedings of SPIE--the International Society for Optical Engineering	X Yang, Y Lei, HK Shu, P Rossi, H Mao, H Shim, WJ Curran, T Liu	02/01/2017
Improved prostate delineation in prostate HDR brachytherapy with TRUS-CT deformable registration technology: A pilot study with MRI validation. Journal of applied clinical medical physics	X Yang, PJ Rossi, AB Jani, H Mao, Z Zhou, WJ Curran, T Liu	01/01/2017
Early Changes of Irradiated Parotid Glands Evaluated by T1rho-Weighted Imaging: A Pilot Study. Journal of computer assisted tomography	N Zhou, C Chu, X Dou, M Li, S Liu, T Guo, L Zhu, B Liu, W Chen, J He, J Yan, Z Zhou, X Yang	01/01/2017
Predicting and Early Monitoring Treatment Efficiency of Cervical Cancer Under Concurrent Chemoradiotherapy by Intravoxel Incoherent Motion Magnetic Resonance Imaging. Journal of computer assisted tomography	L Zhu, L Zhu, H Wang, J Yan, B Liu, W Chen, J He, Z Zhou, X Yang	01/01/2017
Ultrasound 2D strain measurement for arm lymphedema using deformable registration: A feasibility study. PloS one	X Yang, M Torres, S Kirkpatrick, WJ Curran, T Liu	01/01/2017
Early evaluation of irradiated parotid glands with intravoxel incoherent motion MR imaging: correlation with dynamic contrast-enhanced MR imaging. BMC cancer	N Zhou, C Chu, X Dou, M Li, S Liu, L Zhu, B Liu, T Guo, W Chen, J He, J Yan, Z Zhou, X Yang, T Liu	11/08/2016
3D Transrectal Ultrasound (TRUS) Prostate Segmentation Based on Optimal Feature Learning Framework. Proceedings of SPIE--the International Society for Optical Engineering	X Yang, PJ Rossi, AB Jani, H Mao, WJ Curran, T Liu	01/01/2016
Patch-Based Label Fusion for Automatic Multi-Atlas-Based Prostate Segmentation in MR Images. Proceedings of SPIE--the International Society for Optical Engineering	X Yang, AB Jani, PJ Rossi, H Mao, WJ Curran, T Liu	01/01/2016
A 3D Neurovascular Bundles Segmentation Method based on MR-TRUS Deformable Registration. Proceedings of SPIE--the International Society for Optical Engineering	X Yang, P Rossi, AB Jani, H Mao, T Ogunleye, WJ Curran, T Liu	02/01/2015
A MR-TRUS Registration Method for Ultrasound-Guided Prostate Interventions. Proceedings of SPIE--the International Society for Optical Engineering	X Yang, P Rossi, H Mao, AB Jani, T Ogunleye, WJ Curran, T Liu	02/01/2015
3D Ultrasound Nakagami Imaging for Radiation-Induced Vaginal Fibrosis. Proceedings of SPIE--the International Society for Optical Engineering	X Yang, P Rossi, J Shelton, D Bruner, S Tridandapani, T Liu	02/01/2014

Awards

Dr. Yang has received several awards and honors including:

John S. Laughlin Young Scientist Award, American Association of Physicists in Medicine, 2020
Resident Poster Viewing Recognition Award, American Society for Radiation Oncology, 2016
Best-in-Physics Award, American Association of Physicists in Medicine, 2015 and 2016
Cum Laude Poster Award, SPIE Medical Imaging, 2011 and 2015
Young Scientist Award, SPIE Medical Imaging, 2014 and 2015
Postdoctoral Fellowship Award, Department of Defense, 2013
Outstanding Postdoctoral Fellow Award, Emory University, 2013
Science Council Research Award, American Association of Physicists in Medicine, 2012 and 2013
Editor's Pick in Medical Physics, 2012
Clinic Research Poster Award, Emory Winship Cancer Institute, 2012