Alton Farris, MD

Role

Pathology
Research Program

Cancer Prevention and Control
Practicing Since

2008

Background

Alton B. Farris III, MD, is a professor in the Department of Pathology and Laboratory Medicine at Emory University School of Medicine. Dr. Farris is involved in diagnostic work as a renal and gastrointestinal pathologist in the division of Anatomic Pathology.

Dr. Farris is a member of Emory's Center for Comprehensive Informatics, which promotes and develops complementary technology for cutting-edge scientific and medical research. Through the application of novel imaging techniques, Dr. Farris aims to facilitate new insights into pathogenesis, accurate diagnoses and, ultimately, optimal patient care. He is also a member of the Cancer Prevention and Control Research Program at Winship Cancer Institute.

Dr. Farris graduated Magnum Cum Laude with his MD from the University of Mississippi Medical Center. He then completed his residency in Anatomic and Clinical Pathology at Massachusetts General Hospital, where he was Chief Resident in his final year. Dr. Farris also completed a fellowship in Renal and Surgical Gastrointestinal Pathology at Massachusetts General Hospital, and he was a graduate assistant at Harvard Medical School.

Titles & Roles

Professor, Department of Pathology and Laboratory Medicine

Emory University School of Medicine

Education & Training

Education

Fellowship, Surgical Pathology, 2009
Massachusetts General Hospital
Residency, Pathology, 2008
Massachusetts General Hospital
Internship, Pathology, 2005
Massachusetts General Hospital
Medical Education, MD, 2004
University of Mississippi Medical Center

Board Certifications

Anatomic Pathology
American Board of Pathology, 2008
Clinical Pathology
American Board of Pathology, 2008

Research

Publications

Title/Journal	Authors	Publication Date
Tyrosine-Like Crystalloids Localize to Non-Neoplastic True Vocal Cord and Attachments. Head and neck pathology	MN Dababneh, AB Farris, SM Steward-Tharp, K Viswanathan, D Lubin, F Saeed, KR Magliocca	08/23/2024
Clinical Relevance of Computationally Derived Tubular Features: Spatial Relationships and the Development of Tubulointerstitial Scarring in MCD/FSGS. medRxiv : the preprint server for health sciences	F Fan, Q Liu, J Zee, T Ozeki, D Demeke, Y Yang, AB Farris, B Wang, M Shah, J Jacobs, L Mariani, K Lafata, J Rubin, Y Chen, L Holzman, JB Hodgin, A Madabhushi, L Barisoni, A Janowczyk	07/21/2024
Prolonged xenokidney graft survival in sensitized NHP recipients by expression of multiple human transgenes in a triple knockout pig. Science translational medicine	M Manook, D Olaso, I Anwar, I DeLaura, J Yoon, Y Bae, A Barbas, B Shaw, D Moris, M Song, AB Farris, K Stiede, M Youd, S Knechtle, J Kwun	06/12/2024
Banff 2022 Liver Group Meeting report: Monitoring long-term allograft health. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	COC Bellamy, JG O'Leary, O Adeyi, N Baddour, I Batal, J Bucuvalas, A Del Bello, M El Hag, M El-Monayeri, AB Farris, S Feng, MI Fiel, SE Fischer, J Fung, K Grzyb, M Guimei, H Haga, J Hart, AM Jackson, E Jaeckel, NA Khurram, SJ Knechtle, D Lesniak, J Levitsky, G McCaughan, C McKenzie, C Mescoli, R Miquel, MI Minervini, IA Nasser, D Neil, MF O'Neil, O Pappo, P Randhawa, P Ruiz, AS Fueyo, D Schady, T Schiano, M Sebagh, M Smith, HL Stevenson, T Taner, R Taubert, S Thung, P Trunecka, HL Wang, M Wood-Trageser, F Yilmaz, Y Zen, A Zeevi, AJ Demetris	06/01/2024
Banff 2022 Vascularized Composite Allotransplantation Meeting Report: Diagnostic criteria for vascular changes. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	LC Cendales, AB Farris, I Rosales, D Elder, A Gamboa-Dominguez, B Gelb, F Issa, K Ravindra, BJ Nankivell, S Talbot, XG Xu, D Moris, CB Drachenberg, J Kanitakis, MA Selim	05/01/2024
Ex vivo gene editing and cell therapy for hereditary tyrosinemia type 1. Hepatology communications	I Ates, C Stuart, T Rathbone, M Barzi, G He, AM Major, V Shankar, RA Lyman, SS Angner, TFC Mackay, S Srinivasan, AB Farris, KD Bissig, RN Cottle	05/01/2024
Reproducibility and prognostic ability of chronicity parameters in kidney biopsy - Comprehensive evaluation comparing microscopy and artificial intelligence in digital pathology. Human pathology	R Nachiappa Ganesh, EA Graviss, D Nguyen, Z El-Zaatari, L Gaber, R Barrios, L Truong, AB Farris	04/01/2024
Claudin-2 upregulation enhances intestinal permeability, immune activation, dysbiosis, and mortality in sepsis. Proceedings of the National Academy of Sciences of the United States of America	T Oami, S Abtahi, T Shimazui, CW Chen, YY Sweat, Z Liang, EM Burd, AB Farris, JT Roland, S Tsukita, ML Ford, JR Turner, CM Coopersmith	03/05/2024
Banff 2022 pancreas transplantation multidisciplinary report: Refinement of guidelines for T cell-mediated rejection, antibody-mediated rejection and islet pathology. Assessment of duodenal cuff biopsies and noninvasive diagnostic methods. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	CB Drachenberg, M Buettner-Herold, PV Aguiar, C Horsfield, AV Mikhailov, JC Papadimitriou, SV Seshan, M Perosa, U Boggi, P Uva, M Rickels, K Grzyb, L Arend, M Cuatrecasas, MF Toniolo, AB Farris, K Renaudin, L Zhang, C Roufousse, A Gruessner, R Gruessner, R Kandaswamy, S White, G Burke, D Cantarovich, RF Parsons, M Cooper, YC Kudva, A Kukla, A Haririan, S Parajuli, JF Merino-Torres, M Argente-Pla, R Meier, T Dunn, R Ugarte, JS Rao, F Vistoli, R Stratta, J Odorico	03/01/2024
The Banff 2022 Kidney Meeting Work Plan: Data-driven refinement of the Banff Classification for renal allografts. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	C Roufosse, M Naesens, M Haas, C Lefaucheur, RB Mannon, M Afrouzian, N Alachkar, O Aubert, SM Bagnasco, I Batal, COC Bellamy, V Broecker, K Budde, M Clahsen-Van Groningen, SM Coley, LD Cornell, D Dadhania, AJ Demetris, G Einecke, AB Farris, AB Fogo, J Friedewald, IW Gibson, C Horsfield, E Huang, SA Husain, AM Jackson, J Kers, Ž Kikić, A Klein, N Kozakowski, H Liapis, M Mangiola, RA Montgomery, B Nankinvell, DAH Neil, P Nickerson, M Rabant, P Randhawa, LV Riella, I Rosales, V Royal, R Sapir-Pichhadze, P Sarder, M Sarwal, C Schinstock, M Stegall, K Solez, J van der Laak, C Wiebe, RB Colvin, A Loupy, M Mengel	03/01/2024
Validation of a prediction system for risk of kidney allograft failure in pediatric kidney transplant recipients: An international observational study. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	J Hogan, G Divard, O Aubert, R Garro, O Boyer, LA Donald Cooper, AB Farris, M Fila, M Seifert, AL Sellier-Leclerc, J Smith, A Fichtner, B Tönshoff, K Twombley, B Warady, M Pearl, RS Zahr, C Lefaucheur, R Patzer, A Loupy	10/01/2023
Detailed Analysis of Simultaneous Renal and Liver Allografts in the Presence of DSA. Transplantation direct	JG O'Leary, AB Farris, HM Gebel, SK Asrani, M Askar, V Garcia, GJ Snipes, DJ Lo, SJ Knechtle, GB Klintmalm, AJ Demetris	08/01/2023
Desensitization and belatacept-based maintenance therapy in pregnancy-sensitized monkeys receiving a kidney transplant. Science advances	M Manook, D Olaso, IJ Anwar, J Yoon, I Delaura, Y Bae, D Moris, B Shaw, M Song, AB Farris, A Jackson, J Kwun, S Knechtle	05/19/2023
CD28-Selective Inhibition Prolongs Non-Human Primate Kidney Transplant Survival. bioRxiv : the preprint server for biology	BP Lovasik, SC Kim, L Higginbotham, W Wakwe, DV Mathews, C Breeden, AB Farris, CP Larsen, ML Ford, S Nadler, AB Adams	05/05/2023
Dual IL-6 and CTLA-4 blockade regresses pancreatic tumors in a T cell- and CXCR3-dependent manner. JCI insight	MB Ware, M Phillips, C McQuinn, MY Zaidi, HM Knochelmann, E Greene, B Robinson, CJ Herting, TA Mace, Z Chen, C Zhang, MR Farren, AN Ruggieri, JS Bowers, R Shakya, AB Farris, G Young, WE Carson, B El-Rayes, CM Paulos, GB Lesinski	04/24/2023
MYOSIN LIGHT CHAIN KINASE DELETION WORSENS LUNG PERMEABILITY AND INCREASES MORTALITY IN PNEUMONIA-INDUCED SEPSIS. Shock (Augusta, Ga.)	DB Chihade, P Smith, DA Swift, S Otani, W Zhang, CW Chen, LA Jeffers, Z Liang, T Shimazui, EM Burd, AB Farris, BS Staitieh, DM Guidot, ML Ford, M Koval, CM Coopersmith	04/01/2023
Body mass index and molecular subtypes of colorectal cancer. Journal of the National Cancer Institute	N Murphy, CC Newton, M Song, N Papadimitriou, M Hoffmeister, AI Phipps, TA Harrison, PA Newcomb, EK Aglago, SI Berndt, H Brenner, DD Buchanan, Y Cao, AT Chan, X Chen, I Cheng, J Chang-Claude, N Dimou, D Drew, AB Farris, AJ French, S Gallinger, P Georgeson, M Giannakis, GG Giles, SB Gruber, S Harlid, L Hsu, WY Huang, MA Jenkins, RS Laskar, L Le Marchand, P Limburg, Y Lin, M Mandic, JA Nowak, M Obón-Santacana, S Ogino, C Qu, LC Sakoda, RE Schoen, MC Southey, ZK Stadler, RS Steinfelder, W Sun, SN Thibodeau, AE Toland, QM Trinh, KK Tsilidis, T Ugai, B Van Guelpen, X Wang, MO Woods, SH Zaidi, MJ Gunter, U Peters, PT Campbell	02/08/2023
Computational pathology in 2030: a Delphi study forecasting the role of AI in pathology within the next decade. EBioMedicine	MA Berbís, DS McClintock, A Bychkov, J Van der Laak, L Pantanowitz, JK Lennerz, JY Cheng, B Delahunt, L Egevad, C Eloy, AB Farris, F Fraggetta, R García Del Moral, DJ Hartman, MD Herrmann, E Hollemans, KA Iczkowski, A Karsan, M Kriegsmann, ME Salama, JH Sinard, JM Tuthill, B Williams, C Casado-Sánchez, V Sánchez-Turrión, A Luna, J Aneiros-Fernández, J Shen	02/01/2023
Belatacept and carfilzomib-based treatment for antibody-mediated rejection in a sensitized nonhuman primate kidney transplantation model. Frontiers in transplantation	R Schmitz, M Manook, Z Fitch, I Anwar, I DeLaura, D Olaso, A Choi, J Yoon, Y Bae, M Song, AB Farris, J Kwun, S Knechtle	01/01/2023
Urinary markers differentially associate with kidney inflammatory activity and chronicity measures in patients with lupus nephritis. Lupus science & medicine	A Akhgar, D Sinibaldi, L Zeng, AB Farris, J Cobb, M Battle, D Chain, JA Cann, GG Illei, SS Lim, WI White	01/01/2023
Banff Digital Pathology Working Group: Image Bank, Artificial Intelligence Algorithm, and Challenge Trial Developments. Transplant international : official journal of the European Society for Organ Transplantation	AB Farris, MP Alexander, UGJ Balis, L Barisoni, P Boor, RD Bülow, LD Cornell, AJ Demetris, E Farkash, M Hermsen, J Hogan, R Kain, J Kers, J Kong, RM Levenson, A Loupy, M Naesens, P Sarder, JE Tomaszewski, J van der Laak, D van Midden, Y Yagi, K Solez	01/01/2023
Corrigendum: Delphi: A Democratic and Cost-Effective Method of Consensus Generation in Transplantation. Transplant international : official journal of the European Society for Organ Transplantation	M Afrouzian, N Kozakowski, H Liapis, V Broecker, L Truong, C Avila-Casado, H Regele, S Seshan, JM Ambruzs, AB Farris, D Buob, PN Chander, L Cheraghvandi, MC Clahsen-van Groningen, S de Almeida Araujo, DE Baydar, M Formby, DG Ljubanovic, LH Hernandez, E Honsova, N Mohamed, Y Ozluk, M Rabant, V Royal, HL Stevenson, MF Toniolo, D Taheri	01/01/2023
Corrigendum: Thrombotic Microangiopathy in the Renal Allograft: Results of the TMA Banff Working Group Consensus on Pathologic Diagnostic Criteria. Transplant international : official journal of the European Society for Organ Transplantation	M Afrouzian, N Kozakowski, H Liapis, V Broecker, L Truong, C Avila-Casado, H Regele, S Seshan, JM Ambruzs, AB Farris, D Buob, PN Chander, L Cheraghvandi, MC Clahsen-van Groningen, S de Almeida Araujo, DE Baydar, M Formby, DG Ljubanovic, LH Hernandez, E Honsova, N Mohamed, Y Ozluk, M Rabant, V Royal, HL Stevenson, MF Toniolo, D Taheri	01/01/2023
Delphi: A Democratic and Cost-Effective Method of Consensus Generation in Transplantation. Transplant international : official journal of the European Society for Organ Transplantation	M Afrouzian, N Kozakowski, H Liapis, V Broecker, L Truong, C Avila-Casado, H Regele, S Seshan, JM Ambruzs, AB Farris, D Buob, PN Chander, L Cheraghvandi, MC Clahsen-van Groningen, S de Almeida Araujo, D Ertoy Baydar, M Formby, D Galesic Ljubanovic, L Herrera Hernandez, E Honsova, N Mohamed, Y Ozluk, M Rabant, V Royal, HL Stevenson, MF Toniolo, D Taheri	01/01/2023
Thrombotic Microangiopathy in the Renal Allograft: Results of the TMA Banff Working Group Consensus on Pathologic Diagnostic Criteria. Transplant international : official journal of the European Society for Organ Transplantation	M Afrouzian, N Kozakowski, H Liapis, V Broecker, L Truong, C Avila-Casado, H Regele, S Seshan, JM Ambruzs, AB Farris, D Buob, PN Chander, L Cheraghvandi, MC Clahsen-van Groningen, S de Almeida Araujo, D Ertoy Baydar, M Formby, D Galesic Ljubanovic, L Herrera Hernandez, E Honsova, N Mohamed, Y Ozluk, M Rabant, V Royal, HL Stevenson, MF Toniolo, D Taheri	01/01/2023
Open invitation to contribute ideas to a multifaceted approach to ethics in xenotransplantation. Xenotransplantation	K Solez, E Gordon, AB Farris, L Cornell	01/01/2023
Belatacept-Based Maintenance Immunosuppression Controls the Post-Transplant Humoral Immune Response in Highly Sensitized Nonhuman Primates. Kidney360	R Schmitz, ZW Fitch, M Manook, PM Schroder, AY Choi, D Olaso, J Yoon, Y Bae, BI Shaw, M Song, M Kuchibhatla, AB Farris, A Kirk, J Kwun, SJ Knechtle	12/29/2022
Addition of interleukin-6 receptor blockade to carfilzomib-based desensitization in a highly sensitized nonhuman primate model. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	IJ Anwar, B Ezekian, I DeLaura, M Manook, P Schroder, J Yoon, V Curfman, E Branum, J Messina, M Harnois, SR Permar, AB Farris, J Kwun, SJ Knechtle	12/01/2022
An integrative web-based software tool for multi-dimensional pathology whole-slide image analytics. Physics in medicine and biology	A Shen, F Wang, S Paul, D Bhuvanapalli, J Alayof, AB Farris, G Teodoro, DJ Brat, J Kong	11/09/2022
Artificial intelligence based liver portal tract region identification and quantification with transplant biopsy whole-slide images. Computers in biology and medicine	H Yu, N Sharifai, K Jiang, F Wang, G Teodoro, AB Farris, J Kong	11/01/2022
Haemophagocytic lymphohistiocytosis associated with bartonella peliosis hepatis following kidney transplantation in a patient with HIV. The Lancet. Infectious diseases	D Steed, J Collins, AB Farris, J Guarner, D Yarar, R Friedman-Moraco, T Doane, S Pouch, G Marshall Lyon, MH Woodworth	10/01/2022
Hepatic Cysts: Reappraisal of the Classification, Terminology, Differential Diagnosis, and Clinicopathologic Characteristics in 258 Cases. The American journal of surgical pathology	A Armutlu, B Quigley, H Choi, O Basturk, G Akkas, B Pehlivanoglu, B Memis, KT Jang, M Erkan, B Erkan, S Balci, B Saka, P Bagci, AB Farris, DA Kooby, D Martin, B Kalb, SK Maithel, J Sarmiento, MD Reid, NV Adsay	09/01/2022
Virtual liver needle biopsy from reconstructed three-dimensional histopathological images: Quantification of sampling error. Computers in biology and medicine	Q Li, F Wang, Y Chen, H Chen, S Wu, AB Farris, Y Jiang, J Kong	08/01/2022
Redundant Functions of ERK1 and ERK2 Maintain Mouse Liver Homeostasis Through Down-Regulation of Bile Acid Synthesis. Hepatology communications	F Cingolani, Y Liu, Y Shen, J Wen, AB Farris, MJ Czaja	05/01/2022
A novel role of BK potassium channel activity in preventing the development of kidney fibrosis. Kidney international	Y Wang, M Wang, F Ning, D Ren, J Tao, W Xie, DC Eaton, G Jiang, AB Farris, H Xin, H Cai, X Zhang	05/01/2022
Molecular and Pathology Features of Colorectal Tumors and Patient Outcomes Are Associated with Fusobacterium nucleatum and Its Subspecies animalis. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology	I Borozan, SH Zaidi, TA Harrison, AI Phipps, J Zheng, S Lee, QM Trinh, RS Steinfelder, J Adams, BL Banbury, SI Berndt, S Brezina, DD Buchanan, S Bullman, Y Cao, AB Farris, JC Figueiredo, M Giannakis, LE Heisler, JL Hopper, Y Lin, X Luo, R Nishihara, ER Mardis, N Papadopoulos, C Qu, EEG Reid, SN Thibodeau, S Harlid, CY Um, L Hsu, A Gsur, PT Campbell, S Gallinger, PA Newcomb, S Ogino, W Sun, TJ Hudson, V Ferretti, U Peters	01/01/2022
PRO-C3, a Serological Marker of Fibrosis, During Childhood and Correlations With Fibrosis in Pediatric NAFLD. Hepatology communications	CC Cohen, E Castillo-Leon, AB Farris, SA Caltharp, RL Cleeton, EM Sinclair, DE Shevell, MA Karsdal, MJF Nielsen, DJ Leeming, MB Vos	11/01/2021
Collagen Type III and VI Remodeling Biomarkers Are Associated with Kidney Fibrosis in Lupus Nephritis. Kidney360	F Genovese, A Akhgar, SS Lim, AB Farris, M Battle, J Cobb, D Sinibaldi, MA Karsdal, WI White	09/30/2021
Targeting integrin αvβ3 by a rationally designed protein for chronic liver disease treatment. Communications biology	RC Turaga, G Satyanarayana, M Sharma, JJ Yang, S Wang, C Liu, S Li, H Yang, H Grossniklaus, AB Farris, J Gracia-Sancho, ZR Liu	09/16/2021
C3 complement inhibition prevents antibody-mediated rejection and prolongs renal allograft survival in sensitized non-human primates. Nature communications	R Schmitz, ZW Fitch, PM Schroder, AY Choi, M Manook, J Yoon, M Song, JS Yi, S Khandelwal, GM Arepally, AB Farris, ES Reis, JD Lambris, J Kwun, SJ Knechtle	09/15/2021
Optical coherence tomography of small intestine allograft biopsies using a handheld surgical probe. Journal of biomedical optics	ET Jelly, J Kwun, R Schmitz, AB Farris, ZA Steelman, DL Sudan, SJ Knechtle, A Wax	09/01/2021
Image Analysis Pipeline for Renal Allograft Evaluation and Fibrosis Quantification. Kidney international reports	AB Farris, J Vizcarra, M Amgad, LA Donald Cooper, D Gutman, J Hogan	07/01/2021
Collagen Type III Glomerulopathy. Kidney international reports	AV Wilson, F Costigliolo, AB Farris, R Rengen, LJ Arend	06/01/2021
Artificial intelligence and algorithmic computational pathology: an introduction with renal allograft examples. Histopathology	AB Farris, J Vizcarra, M Amgad, LAD Cooper, D Gutman, J Hogan	05/01/2021
Assessment of a computerized quantitative quality control tool for whole slide images of kidney biopsies. The Journal of pathology	Y Chen, J Zee, A Smith, C Jayapandian, J Hodgin, D Howell, M Palmer, D Thomas, C Cassol, AB Farris, K Perkinson, A Madabhushi, L Barisoni, A Janowczyk	03/01/2021
Measuring the Impact of Targeting FcRn-Mediated IgG Recycling on Donor-Specific Alloantibodies in a Sensitized NHP Model. Frontiers in immunology	M Manook, WJ Flores, R Schmitz, Z Fitch, J Yoon, Y Bae, B Shaw, A Kirk, M Harnois, S Permar, AB Farris, DM Magnani, J Kwun, S Knechtle	01/01/2021
Preoperative carfilzomib and lulizumab based desensitization prolongs graft survival in a sensitized non-human primate model. Kidney international	PM Schroder, R Schmitz, ZW Fitch, B Ezekian, J Yoon, AY Choi, M Manook, A Barbas, F Leopardi, M Song, AB Farris, B Collins, J Kwun, SJ Knechtle	01/01/2021
Avoidance of CNI and steroids using belatacept-Results of the Clinical Trials in Organ Transplantation 16 trial. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	RB Mannon, B Armstrong, PG Stock, AK Mehta, AB Farris, N Watson, Y Morrison, M Sarwal, T Sigdel, N Bridges, M Robien, KA Newell, CP Larsen	12/01/2020
Deep-learning-based accurate hepatic steatosis quantification for histological assessment of liver biopsies. Laboratory investigation; a journal of technical methods and pathology	M Roy, F Wang, H Vo, D Teng, G Teodoro, AB Farris, E Castillo-Leon, MB Vos, J Kong	10/01/2020
Banff Digital Pathology Working Group: Going digital in transplant pathology. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	AB Farris, I Moghe, S Wu, J Hogan, LD Cornell, MP Alexander, J Kers, AJ Demetris, RM Levenson, J Tomaszewski, L Barisoni, Y Yagi, K Solez	09/01/2020
The Banff 2019 Kidney Meeting Report (I): Updates on and clarification of criteria for T cell- and antibody-mediated rejection. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	A Loupy, M Haas, C Roufosse, M Naesens, B Adam, M Afrouzian, E Akalin, N Alachkar, S Bagnasco, JU Becker, LD Cornell, MC Clahsen-van Groningen, AJ Demetris, D Dragun, JP Duong van Huyen, AB Farris, AB Fogo, IW Gibson, D Glotz, J Gueguen, Z Kikic, N Kozakowski, E Kraus, C Lefaucheur, H Liapis, RB Mannon, RA Montgomery, BJ Nankivell, V Nickeleit, P Nickerson, M Rabant, L Racusen, P Randhawa, B Robin, IA Rosales, R Sapir-Pichhadze, CA Schinstock, D Seron, HK Singh, RN Smith, MD Stegall, A Zeevi, K Solez, RB Colvin, M Mengel	09/01/2020
Decreased Hepatocyte Autophagy Leads to Synergistic IL-1β and TNF Mouse Liver Injury and Inflammation. Hepatology (Baltimore, Md.)	Y Shen, SA Malik, M Amir, P Kumar, F Cingolani, J Wen, Y Liu, E Zhao, AB Farris, R Raeman, MJ Czaja	08/01/2020
Low-grade fibromyxoid sarcoma: a potentially useful histologic finding. Histopathology	SJ Logan, A Perricone, AB Farris, M Edgar	08/01/2020
Landscape of somatic single nucleotide variants and indels in colorectal cancer and impact on survival. Nature communications	SH Zaidi, TA Harrison, AI Phipps, R Steinfelder, QM Trinh, C Qu, BL Banbury, P Georgeson, CS Grasso, M Giannakis, JB Adams, E Alwers, EL Amitay, RT Barfield, SI Berndt, I Borozan, H Brenner, S Brezina, DD Buchanan, Y Cao, AT Chan, J Chang-Claude, CM Connolly, DA Drew, AB Farris, JC Figueiredo, AJ French, CS Fuchs, LA Garraway, S Gruber, MA Guinter, SR Hamilton, S Harlid, LE Heisler, A Hidaka, JL Hopper, WY Huang, JR Huyghe, MA Jenkins, PM Krzyzanowski, M Lemire, Y Lin, X Luo, ER Mardis, JD McPherson, JK Miller, V Moreno, XJ Mu, R Nishihara, N Papadopoulos, D Pasternack, MJ Quist, A Rafikova, EEG Reid, E Shinbrot, BH Shirts, LD Stein, CD Teney, L Timms, CY Um, B Van Guelpen, M Van Tassel, X Wang, DA Wheeler, CK Yung, L Hsu, S Ogino, A Gsur, PA Newcomb, S Gallinger, M Hoffmeister, PT Campbell, SN Thibodeau, W Sun, TJ Hudson, U Peters	07/20/2020
Cultured thymus tissue implantation promotes donor-specific tolerance to allogeneic heart transplants. JCI insight	J Kwun, J Li, C Rouse, JB Park, AB Farris, M Kuchibhatla, JW Turek, SJ Knechtle, AD Kirk, ML Markert	06/04/2020
Association Between Molecular Subtypes of Colorectal Tumors and Patient Survival, Based on Pooled Analysis of 7 International Studies. Gastroenterology	AI Phipps, E Alwers, T Harrison, B Banbury, H Brenner, PT Campbell, J Chang-Claude, D Buchanan, AT Chan, AB Farris, JC Figueiredo, S Gallinger, GG Giles, M Jenkins, RL Milne, PA Newcomb, ML Slattery, M Song, S Ogino, SH Zaidi, M Hoffmeister, U Peters	06/01/2020
Western diet-induced increase in colonic bile acids compromises epithelial barrier in nonalcoholic steatohepatitis. FASEB journal : official publication of the Federation of American Societies for Experimental Biology	B Gupta, Y Liu, DM Chopyk, RP Rai, C Desai, P Kumar, AB Farris, A Nusrat, CA Parkos, FA Anania, R Raeman	05/01/2020
Targeting Calcium Release-activated Calcium Channel Is Not Sufficient to Prevent Rejection in Nonhuman Primate Kidney Transplantation. Transplantation	J Kwun, B Ezekian, M Manook, J Park, J Yoon, K Freischlag, M Song, AB Farris, J Sloan-Lancaster, C Fortier, PE Rao, SJ Knechtle	05/01/2020
Correlation Patterns Among B7 Family Ligands and Tryptophan Degrading Enzymes in Hepatocellular Carcinoma. Frontiers in oncology	R Chinnadurai, R Scandolara, OB Alese, D Arafat, D Ravindranathan, AB Farris, BF El-Rayes, G Gibson	01/01/2020
Stathmin 1 Induces Murine Hepatocyte Proliferation and Increased Liver Mass. Hepatology communications	E Zhao, Y Shen, M Amir, AB Farris, MJ Czaja	01/01/2020
Correction: Chronic Alcohol Ingestion Increases Mortality and Organ Injury in a Murine Model of Septic Peritonitis. PloS one	BP Yoseph, E Breed, CE Overgaard, CJ Ward, Z Liang, ME Wagener, DR Lexcen, ER Lusczek, GJ Beilman, EM Burd, AB Farris, DM Guidot, M Koval, ML Ford, CM Coopersmith	01/01/2020
Quantitative assessment of liver fibrosis by digital image analysis reveals correlation with qualitative clinical fibrosis staging in liver transplant patients. PloS one	K Jiang, MK Mohammad, WA Dar, J Kong, AB Farris	01/01/2020
Pretransplant Desensitization with Costimulation Blockade and Proteasome Inhibitor Reduces DSA and Delays Antibody-Mediated Rejection in Highly Sensitized Nonhuman Primate Kidney Transplant Recipients. Journal of the American Society of Nephrology : JASN	B Ezekian, PM Schroder, MS Mulvihill, A Barbas, B Collins, K Freischlag, J Yoon, JS Yi, F Smith, D Olaso, FM Saccoccio, S Permar, AB Farris, J Kwun, SJ Knechtle	12/01/2019
Early detection and staging of chronic liver diseases with a protein MRI contrast agent. Nature communications	M Salarian, RC Turaga, S Xue, M Nezafati, K Hekmatyar, J Qiao, Y Zhang, S Tan, OY Ibhagui, Y Hai, J Li, R Mukkavilli, M Sharma, P Mittal, X Min, S Keilholz, L Yu, G Qin, AB Farris, ZR Liu, JJ Yang	10/29/2019
Abatacept as rescue immunosuppression after calcineurin inhibitor treatment failure in renal transplantation. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	IR Badell, GM Karadkhele, P Vasanth, AB Farris, JM Robertson, CP Larsen	08/01/2019
Long-term survival of pig-to-rhesus macaque renal xenografts is dependent on CD4 T cell depletion. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	SC Kim, DV Mathews, CP Breeden, LB Higginbotham, J Ladowski, G Martens, A Stephenson, AB Farris, EA Strobert, J Jenkins, EM Walters, CP Larsen, M Tector, AJ Tector, AB Adams	08/01/2019
Daratumumab in Sensitized Kidney Transplantation: Potentials and Limitations of Experimental and Clinical Use. Journal of the American Society of Nephrology : JASN	J Kwun, M Matignon, M Manook, S Guendouz, V Audard, D Kheav, E Poullot, C Gautreau, B Ezekian, D Bodez, T Damy, L Faivre, D Menouche, J Yoon, J Park, K Belhadj, D Chen, AM Bilewski, JS Yi, B Collins, M Stegall, AB Farris, S Knechtle, P Grimbert	07/01/2019
Murine Pancreatic Cancer Alters T Cell Activation and Apoptosis and Worsens Survival After Cecal Ligation and Puncture. Shock (Augusta, Ga.)	JD Lyons, CW Chen, Z Liang, W Zhang, DB Chihade, EM Burd, AB Farris, ML Ford, CM Coopersmith	06/01/2019
LIVER STEATOSIS SEGMENTATION WITH DEEP LEARNING METHODS. Proceedings. IEEE International Symposium on Biomedical Imaging	X Guo, F Wang, G Teodoro, AB Farris, J Kong	04/01/2019
Dual targeting: Combining costimulation blockade and bortezomib to permit kidney transplantation in sensitized recipients. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	CK Burghuber, M Manook, B Ezekian, AC Gibby, FV Leopardi, M Song, J Jenks, F Saccoccio, S Permar, AB Farris, NN Iwakoshi, J Kwun, SJ Knechtle	03/01/2019
Honokiol Increases CD4+ T Cell Activation and Decreases TNF but Fails to Improve Survival Following Sepsis. Shock (Augusta, Ga.)	NJ Klingensmith, CW Chen, Z Liang, EM Burd, AB Farris, JL Arbiser, ML Ford, CM Coopersmith	08/01/2018
Segmentation of Overlapped Steatosis in Whole-Slide Liver Histopathology Microscopy Images. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	M Roy, F Wang, G Teodoro, MB Vos, AB Farris, J Kong	07/01/2018
Development of CD3 cell quantitation algorithms for renal allograft biopsy rejection assessment utilizing open source image analysis software. Virchows Archiv : an international journal of pathology	A Moon, GH Smith, J Kong, TE Rogers, CL Ellis, ABB Farris	02/01/2018
IL-21 Biased Alemtuzumab Induced Chronic Antibody-Mediated Rejection Is Reversed by LFA-1 Costimulation Blockade. Frontiers in immunology	J Kwun, J Park, JS Yi, AB Farris, AD Kirk, SJ Knechtle	01/01/2018
Successful desensitization with proteasome inhibition and costimulation blockade in sensitized nonhuman primates. Blood advances	J Kwun, C Burghuber, M Manook, B Ezekian, J Park, J Yoon, JS Yi, N Iwakoshi, A Gibby, JJ Hong, AB Farris, AD Kirk, SJ Knechtle	11/14/2017
Thrombalexin: Use of a Cytotopic Anticoagulant to Reduce Thrombotic Microangiopathy in a Highly Sensitized Model of Kidney Transplantation. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	M Manook, J Kwun, C Burghuber, K Samy, M Mulvihill, J Yoon, H Xu, AL MacDonald, K Freischlag, V Curfman, E Branum, D Howell, AB Farris, RA Smith, S Sacks, A Dorling, N Mamode, SJ Knechtle	08/01/2017
Myosin light chain kinase knockout improves gut barrier function and confers a survival advantage in polymicrobial sepsis. Molecular medicine (Cambridge, Mass.)	CA Lorentz, Z Liang, M Meng, CW Chen, BP Yoseph, ER Breed, R Mittal, NJ Klingensmith, AB Farris, EM Burd, M Koval, ML Ford, CM Coopersmith	08/01/2017
Alloimmunity But Not Viral Immunity Promotes Allograft Loss in a Mouse Model of Polyomavirus-Associated Allograft Injury. Transplantation direct	SC Kim, J Wang, Y Dong, DV Mathews, JA Albrecht, CP Breeden, AB Farris, AE Lukacher, ML Ford, KA Newell, AB Adams	06/01/2017
Fc-Silent Anti-CD154 Domain Antibody Effectively Prevents Nonhuman Primate Renal Allograft Rejection. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	SC Kim, W Wakwe, LB Higginbotham, DV Mathews, CP Breeden, AC Stephenson, J Jenkins, E Strobert, K Price, L Price, R Kuhn, H Wang, A Yamniuk, S Suchard, AB Farris, TC Pearson, CP Larsen, ML Ford, A Suri, S Nadler, AB Adams	05/01/2017
Selective Targeting of High-Affinity LFA-1 Does Not Augment Costimulation Blockade in a Nonhuman Primate Renal Transplantation Model. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	KP Samy, DJ Anderson, DJ Lo, MS Mulvihill, M Song, AB Farris, BS Parker, AL MacDonald, C Lu, TA Springer, SC Kachlany, KA Reimann, T How, FV Leopardi, KS Franke, KD Williams, BH Collins, AD Kirk	05/01/2017
The Impact of New Technologic and Molecular Advances in the Daily Practice of Gastrointestinal and Hepatobiliary Pathology. Archives of pathology & laboratory medicine	Y Xue, AB Farris, B Quigley, A Krasinskas	04/01/2017
Whole Slide Imaging for Analytical Anatomic Pathology and Telepathology: Practical Applications Today, Promises, and Perils. Archives of pathology & laboratory medicine	AB Farris, C Cohen, TE Rogers, GH Smith	04/01/2017
Renal allograft granulomatous interstitial nephritis: observations of an uncommon injury pattern in 22 transplant recipients. Clinical kidney journal	AB Farris, CL Ellis, TE Rogers, WJ Chon, A Chang, SM Meehan	04/01/2017
Dual Inhibition of MEK and PI3K/Akt Rescues Cancer Cachexia through both Tumor-Extrinsic and -Intrinsic Activities. Molecular cancer therapeutics	EE Talbert, J Yang, TA Mace, MR Farren, AB Farris, GS Young, O Elnaggar, Z Che, CD Timmers, P Rajasekera, JM Maskarinec, M Bloomston, T Bekaii-Saab, DC Guttridge, GB Lesinski	02/01/2017
Banff Histopathological Consensus Criteria for Preimplantation Kidney Biopsies. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	H Liapis, JP Gaut, C Klein, S Bagnasco, E Kraus, AB Farris, E Honsova, A Perkowska-Ptasinska, D David, J Goldberg, M Smith, M Mengel, M Haas, S Seshan, KL Pegas, T Horwedel, Y Paliwa, X Gao, D Landsittel, P Randhawa	01/01/2017
Establishment of human metastatic colorectal cancer model in rabbit liver: A pilot study. PloS one	V Prieto, JM Ludwig, AB Farris, GP Nagaraju, TO Lawal, B El-Rayes, HS Kim	01/01/2017
Loss of Junctional Adhesion Molecule A Promotes Severe Steatohepatitis in Mice on a Diet High in Saturated Fat, Fructose, and Cholesterol. Gastroenterology	K Rahman, C Desai, SS Iyer, NE Thorn, P Kumar, Y Liu, T Smith, AS Neish, H Li, S Tan, P Wu, X Liu, Y Yu, AB Farris, A Nusrat, CA Parkos, FA Anania	10/01/2016
Concomitant herpes simplex virus colitis and hepatitis in a man with ulcerative colitis: Case report and review of the literature. Medicine	VK Phadke, RJ Friedman-Moraco, BC Quigley, AB Farris, JP Norvell	10/01/2016
Dysplasia discrimination in intestinal-type neoplasia of the esophagus and colon via digital image analysis. Virchows Archiv : an international journal of pathology	DR Martin, DR Braxton, AB Farris	10/01/2016
Rapamycin Interferes With Postdepletion Regulatory T Cell Homeostasis and Enhances DSA Formation Corrected by CTLA4-Ig. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	B Oh, J Yoon, A Farris, A Kirk, S Knechtle, J Kwun	09/01/2016
C/EBP homologous protein modulates liraglutide-mediated attenuation of non-alcoholic steatohepatitis. Laboratory investigation; a journal of technical methods and pathology	K Rahman, Y Liu, P Kumar, T Smith, NE Thorn, AB Farris, FA Anania	08/01/2016
GPRC5A suppresses protein synthesis at the endoplasmic reticulum to prevent radiation-induced lung tumorigenesis. Nature communications	J Wang, AB Farris, K Xu, P Wang, X Zhang, DM Duong, H Yi, HK Shu, SY Sun, Y Wang	06/08/2016
Antibody-Mediated Rejection in Sensitized Nonhuman Primates: Modeling Human Biology. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	CK Burghuber, J Kwun, EJ Page, M Manook, AC Gibby, FV Leopardi, M Song, AB Farris, JJ Hong, F Villinger, AB Adams, NN Iwakoshi, SJ Knechtle	06/01/2016
Lessons learned using different mouse models during space radiation-induced lung tumorigenesis experiments. Life sciences in space research	J Wang, X Zhang, P Wang, X Wang, AB Farris, Y Wang	06/01/2016
CD57(+) CD4 T Cells Underlie Belatacept-Resistant Allograft Rejection. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	J Espinosa, F Herr, G Tharp, S Bosinger, M Song, AB Farris, R George, J Cheeseman, L Stempora, R Townsend, A Durrbach, AD Kirk	04/01/2016
Glial cell line-derived neurotrophic factor protects against high-fat diet-induced hepatic steatosis by suppressing hepatic PPAR-γ expression. American journal of physiology. Gastrointestinal and liver physiology	SM Mwangi, S Peng, BG Nezami, N Thorn, AB Farris, S Jain, H Laroui, D Merlin, F Anania, S Srinivasan	01/15/2016
Comparison of Outcomes between Individuals with Pure and Mixed Lupus Nephritis: A Retrospective Study. PloS one	TO Ilori, N Enofe, A Oommen, J Cobb, J Navarrete, DA Adedinsewo, O Oshikoya, H Fevrier, AB Farris, L Plantinga, AO Ojo	01/01/2016
Murine Lung Cancer Increases CD4+ T Cell Apoptosis and Decreases Gut Proliferative Capacity in Sepsis. PloS one	JD Lyons, R Mittal, KT Fay, CW Chen, Z Liang, LM Margoles, EM Burd, AB Farris, ML Ford, CM Coopersmith	01/01/2016
Renal Medullary and Cortical Correlates in Fibrosis, Epithelial Mass, Microvascularity, and Microanatomy Using Whole Slide Image Analysis Morphometry. PloS one	AB Farris, CL Ellis, TE Rogers, D Lawson, C Cohen, S Rosen	01/01/2016
Clinicopathologic Features and Outcome of Young Adults With Stage IV Colorectal Cancer. American journal of clinical oncology	NN Hawk, TE Long, MH Imam, BM Mathew, S Kim, Z Chen, M Goodman, P Sullivan, E Brutcher, J Kauh, SK Maithel, VN Adsay, AB Farris, C Staley, BF El-Rayes	12/01/2015
Impact of Leukocyte Function-Associated Antigen-1 Blockade on Endogenous Allospecific T Cells to Multiple Minor Histocompatibility Antigen Mismatched Cardiac Allograft. Transplantation	J Kwun, AB Farris, H Song, WT Mahle, WJ Burlingham, SJ Knechtle	12/01/2015
Differentiation of lipid-poor adrenal adenomas from non-adenomas with magnetic resonance imaging: Utility of dynamic, contrast enhancement and single-shot T2-weighted sequences. European journal of radiology	D Becker-Weidman, B Kalb, PK Mittal, PA Harri, H Arif-Tiwari, AB Farris, Z Chen, K Sungjin, DR Martin	11/01/2015
Heat shock protein 90 promotes epithelial to mesenchymal transition, invasion, and migration in colorectal cancer. Molecular carcinogenesis	GP Nagaraju, TE Long, W Park, JC Landry, L Taliaferro-Smith, AB Farris, R Diaz, BF El-Rayes	10/01/2015
Association between body mass index and mortality for colorectal cancer survivors: overall and by tumor molecular phenotype. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology	PT Campbell, CC Newton, PA Newcomb, AI Phipps, DJ Ahnen, JA Baron, DD Buchanan, G Casey, SP Cleary, M Cotterchio, AB Farris, JC Figueiredo, S Gallinger, RC Green, RW Haile, JL Hopper, MA Jenkins, L Le Marchand, KW Makar, JR McLaughlin, JD Potter, AG Renehan, FA Sinicrope, SN Thibodeau, CM Ulrich, AK Win, NM Lindor, PJ Limburg	08/01/2015
Relative effectiveness at 1 gy after acute and fractionated exposures of heavy ions with different linear energy transfer for lung tumorigenesis. Radiation research	X Wang, AB Farris Iii, P Wang, X Zhang, H Wang, Y Wang	02/01/2015
Pre-transplant antibody screening and anti-CD154 costimulation blockade promote long-term xenograft survival in a pig-to-primate kidney transplant model. Xenotransplantation	L Higginbotham, D Mathews, CA Breeden, M Song, AB Farris, CP Larsen, ML Ford, AJ Lutz, M Tector, KA Newell, AJ Tector, AB Adams	01/01/2015
Establishment of the cancer prevention study II nutrition cohort colorectal tissue repository. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology	PT Campbell, A Deka, P Briggs, M Cicek, AB Farris, MM Gaudet, EJ Jacobs, CC Newton, AV Patel, LR Teras, SN Thibodeau, L Tillmans, SM Gapstur	12/01/2014
Hepatoid adenocarcinoma of the lung: a case report and review of the literature. Journal of gastrointestinal cancer	W Shaib, R Sharma, M Mosunjac, AB Farris, B El Rayes	12/01/2014
What is the best way to measure renal fibrosis?: A pathologist's perspective. Kidney international supplements	AB Farris, CE Alpers	11/01/2014
Necrotizing sialometaplasia-like change of the esophageal submucosal glands is associated with Barrett's esophagus. Virchows Archiv : an international journal of pathology	DR Braxton, DC Nickleach, Y Liu, AB Farris	08/01/2014
Banff fibrosis study: multicenter visual assessment and computerized analysis of interstitial fibrosis in kidney biopsies. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	AB Farris, S Chan, J Climenhaga, B Adam, CO Bellamy, D Serón, RB Colvin, J Reeve, M Mengel	04/01/2014
Beyond a broken heart: circulatory dysfunction in the failing Fontan. Pediatric cardiology	M Mori, AJ Aguirre, RW Elder, A Kashkouli, AB Farris, RM Ford, WM Book	04/01/2014
MicroRNA 375 mediates palmitate-induced enteric neuronal damage and high-fat diet-induced delayed intestinal transit in mice. Gastroenterology	BG Nezami, SM Mwangi, JE Lee, S Jeppsson, M Anitha, SS Yarandi, AB Farris, S Srinivasan	02/01/2014
HER2 in resected gastric cancer: Is there prognostic value? Journal of surgical oncology	SB Fisher, KE Fisher, MH Squires, SH Patel, DA Kooby, BF El-Rayes, K Cardona, MC Russell, CA Staley, AB Farris, SK Maithel	02/01/2014
Costimulation blockade alters germinal center responses and prevents antibody-mediated rejection. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	EJ Kim, J Kwun, AC Gibby, JJ Hong, AB Farris, NN Iwakoshi, F Villinger, AD Kirk, SJ Knechtle	01/01/2014
Intestine-specific deletion of microsomal triglyceride transfer protein increases mortality in aged mice. PloS one	Z Liang, Y Xie, JA Dominguez, ER Breed, BP Yoseph, EM Burd, AB Farris, NO Davidson, CM Coopersmith	01/01/2014
Phenotypic T cell exhaustion in a murine model of bacterial infection in the setting of pre-existing malignancy. PloS one	R Mittal, M Wagener, ER Breed, Z Liang, BP Yoseph, EM Burd, AB Farris, CM Coopersmith, ML Ford	01/01/2014
Prostate cancer metastatic to bone has higher expression of the calcium-sensing receptor (CaSR) than primary prostate cancer. Receptors & clinical investigation	J Feng, X Xu, B Li, E Brown, AB Farris, SY Sun, JJ Yang	01/01/2014
Inhibition of αvβ6 promotes acute renal allograft rejection in nonhuman primates. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	DJ Lo, AB Farris, M Song, F Leopardi, DJ Anderson, EA Strobert, S Ramakrishnan, NA Turgeon, AK Mehta, B Turnbull, B Maroni, SM Violette, AD Kirk	12/01/2013
Novel synthetic curcumin analogues EF31 and UBS109 are potent DNA hypomethylating agents in pancreatic cancer. Cancer letters	GP Nagaraju, S Zhu, J Wen, AB Farris, VN Adsay, R Diaz, JP Snyder, S Mamoru, BF El-Rayes	12/01/2013
Antiangiogenic effects of ganetespib in colorectal cancer mediated through inhibition of HIF-1α and STAT-3. Angiogenesis	GP Nagaraju, W Park, J Wen, H Mahaseth, J Landry, AB Farris, F Willingham, PS Sullivan, DA Proia, I El-Hariry, L Taliaferro-Smith, R Diaz, BF El-Rayes	10/01/2013
Inhibition of IKKβ in enterocytes exacerbates sepsis-induced intestinal injury and worsens mortality. Critical care medicine	JA Dominguez, AJ Samocha, Z Liang, EM Burd, AB Farris, CM Coopersmith	10/01/2013
Differential expression and prognostic value of ERCC1 and thymidylate synthase in resected gastric adenocarcinoma. Cancer	MH Squires, SB Fisher, KE Fisher, SH Patel, DA Kooby, BF El-Rayes, CA Staley, AB Farris, SK Maithel	09/01/2013
Liver steatosis assessment: correlations among pathology, radiology, clinical data and automated image analysis software. Pathology, research and practice	MJ Lee, P Bagci, J Kong, MB Vos, P Sharma, B Kalb, JH Saltz, DR Martin, NV Adsay, AB Farris	06/01/2013
Belatacept and sirolimus prolong nonhuman primate renal allograft survival without a requirement for memory T cell depletion. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	DJ Lo, DJ Anderson, TA Weaver, F Leopardi, M Song, AB Farris, EA Strobert, J Jenkins, NA Turgeon, AK Mehta, CP Larsen, AD Kirk	02/01/2013
Excision repair cross-complementing gene-1, ribonucleotide reductase subunit M1, ribonucleotide reductase subunit M2, and human equilibrative nucleoside transporter-1 expression and prognostic value in biliary tract malignancy. Cancer	SB Fisher, KE Fisher, SH Patel, MG Lim, DA Kooby, BF El-Rayes, CA Staley, NV Adsay, AB Farris, SK Maithel	01/15/2013
Hepatocellular carcinoma in an adult with repaired tetralogy of fallot. Congenital heart disease	N McCabe, AB Farris, H Hon, R Ford, WM Book	01/01/2013
Chronic alcohol ingestion increases mortality and organ injury in a murine model of septic peritonitis. PloS one	BP Yoseph, E Breed, CE Overgaard, CJ Ward, Z Liang, ME Wagener, DR Lexcen, ER Lusczek, GJ Beilman, EM Burd, AB Farris, DM Guidot, M Koval, ML Ford, CM Coopersmith	01/01/2013
Patterns of de novo allo B cells and antibody formation in chronic cardiac allograft rejection after alemtuzumab treatment. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	J Kwun, BC Oh, AC Gibby, R Ruhil, VT Lu, DW Kim, EK Page, OP Bulut, MQ Song, AB Farris, AD Kirk, SJ Knechtle, NN Iwakoshi	10/01/2012
Oxaliplatin-induced hepatoportal sclerosis, portal hypertension, and variceal bleeding successfully treated with transjugular intrahepatic portosystemic shunt. Clinical colorectal cancer	TO Lawal, AB Farris, BF El-Rayes, RM Subramanian, HS Kim	09/01/2012
Liver MRI and histological correlates in chronic liver disease on multiphase gadolinium-enhanced 3D gradient echo imaging. Journal of magnetic resonance imaging : JMRI	DR Martin, T Lauenstein, B Kalb, C Lurie, H Kitajima, P Sharma, K Salman, R Moreira, AB Farris, J Spivey, E Martinez, S Hanish, V Adsay	08/01/2012
Evidence for kidney rejection after combined bone marrow and renal transplantation despite ongoing whole-blood chimerism in rhesus macaques. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	SK Ramakrishnan, A Page, AB Farris, K Singh, F Leopardi, K Hamby, S Sen, A Polnett, T Deane, M Song, L Stempora, E Strobert, AD Kirk, CP Larsen, LS Kean	07/01/2012
Adaptive immunity rather than viral cytopathology mediates polyomavirus-associated nephropathy in mice. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	JA Albrecht, Y Dong, J Wang, C Breeden, AB Farris, AE Lukacher, KA Newell	06/01/2012
Renal interstitial fibrosis: mechanisms and evaluation. Current opinion in nephrology and hypertension	AB Farris, RB Colvin	05/01/2012
Digital Pathology: Data-Intensive Frontier in Medical Imaging: Health-information sharing, specifically of digital pathology, is the subject of this paper which discusses how sharing the rich images in pathology can stretch the capabilities of all otherwise well-practiced disciplines. Proceedings of the IEEE. Institute of Electrical and Electronics Engineers	LA Cooper, AB Carter, AB Farris, F Wang, J Kong, DA Gutman, P Widener, TC Pan, SR Cholleti, A Sharma, TM Kurc, DJ Brat, JH Saltz	04/01/2012
Tumoral and angiogenesis factors in hepatocellular carcinoma after locoregional therapy. Pathology, research and practice	AB Farris, N Dursun, R Dhanasekaran, I Coban, EB McIntosh, NV Adsay, HS Kim	01/15/2012
Hepatocellular carcinoma lesion characterization: single-institution clinical performance review of multiphase gadolinium-enhanced MR imaging--comparison to prior same-center results after MR systems improvements. Radiology	DJ Becker-Weidman, B Kalb, P Sharma, HD Kitajima, CR Lurie, Z Chen, JR Spivey, SJ Knechtle, SI Hanish, NV Adsay, AB Farris, DR Martin	12/01/2011
Flagellin, a TLR5 agonist, reduces graft-versus-host disease in allogeneic hematopoietic stem cell transplantation recipients while enhancing antiviral immunity. Journal of immunology (Baltimore, Md. : 1950)	MS Hossain, DL Jaye, BP Pollack, AB Farris, ML Tselanyane, E David, JD Roback, AT Gewirtz, EK Waller	11/15/2011
Clinically relevant biomarkers to select patients for targeted inhibitor therapy after resection of hepatocellular carcinoma. Annals of surgical oncology	SH Patel, PJ Kneuertz, M Delgado, DA Kooby, CA Staley, BF El-Rayes, JS Kauh, JM Sarmiento, S Hanish, C Cohen, AB Farris, SK Maithel	11/01/2011
Hypergastrinemia, type 1 gastric carcinoid tumors: diagnosis and management. Journal of clinical oncology : official journal of the American Society of Clinical Oncology	OY Hung, SK Maithel, FF Willingham, AB Farris, JS Kauh	09/01/2011
Acute renal endothelial injury during marrow recovery in a cohort of combined kidney and bone marrow allografts. American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons	AB Farris, D Taheri, T Kawai, L Fazlollahi, W Wong, N Tolkoff-Rubin, TR Spitzer, AJ Iafrate, FI Preffer, SA Locascio, B Sprangers, S Saidman, RN Smith, AB Cosimi, M Sykes, DH Sachs, RB Colvin	07/01/2011
Pancreatitis, Other Inflammatory Lesions, and Pancreatic Pseudotumors. Surgical pathology clinics	AB Farris, O Basturk, NV Adsay	06/01/2011
A data model and database for high-resolution pathology analytical image informatics. Journal of pathology informatics	F Wang, J Kong, L Cooper, T Pan, T Kurc, W Chen, A Sharma, C Niedermayr, TW Oh, D Brat, AB Farris, DJ Foran, J Saltz	01/01/2011
Autoimmune pancreatitis-related diabetes: quantitative analysis of endocrine islet cells and inflammatory infiltrate. Virchows Archiv : an international journal of pathology	AB Farris, GY Lauwers, V Deshpande	09/01/2010

Awards

Chief Resident, Anatomic Pathology, Massachusetts General Hospital, 2008

Ratings & Reviews

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