Yonggang Ke, PhD
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Research Program
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Phone Number
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Email Address
Biography
Education
Dr. Ke received his PhD from Arizona State University. He completed a postdoctoral fellowship at the Dana-Farber Cancer Institute, affiliated with the Department of Biological Chemistry and Molecular Pharmacology at Harvard Medical School.
Titles & Roles
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Associate Professor, Wallace H. Coulter Department of Biomedical EngineeringGeorgia Institute of Technology and Emory University
Research
Dr. Ke's research is highly interdisciplinary combining chemistry, biology, physics, material science and engineering. The overall mission of his research is to use interdisciplinary research tools to program nucleic-acid-based "beautiful structures and smart devices" at nanoscale, and use them for scientific exploration and technological applications. Specifically, his team focuses on (1) developing new DNA self-assembly paradigms for constructing DNA nanostructures with greater structural complexity, and with controllable sizes and shapes; (2) developing new imaging or drug delivery systems based on DNA nanostructuresl; (3) exploring design of novel DNA-based nanodevices for understanding basic biological questions at molecular level; (4) developing DNA-templated protein devices for constructing artificial bio-reactors.
For cancer-related research/application, Dr. Ke will focus on using DNA/RNA nanostructures as drug delivery vehicles. He is also interested in using DNA/RNA nanostructures to study cancer cell biology at molecular level.
Publications
| Title/Journal | Authors | Publication Date |
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Dynamic Gold Nanostructures Based on DNA Self Assembly. Small (Weinheim an der Bergstrasse, Germany) |
B Kou, Z Wang, S Mousavi, P Wang, Y Ke | 06/01/2024 |
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Free-Standing DNA Origami Superlattice to Facilitate Cryo-EM Visualization of Membrane Vesicles. Journal of the American Chemical Society |
N Aissaoui, A Mills, J Lai-Kee-Him, N Triomphe, Q Cece, C Doucet, A Bonhoure, M Vidal, Y Ke, G Bellot | 05/15/2024 |
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Mechanism of DNA origami folding elucidated by mesoscopic simulations. Nature communications |
M DeLuca, D Duke, T Ye, M Poirier, Y Ke, C Castro, G Arya | 04/08/2024 |
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A Programmable DNAzyme for the Sensitive Detection of Nucleic Acids. Angewandte Chemie (International ed. in English) |
C Shi, D Yang, X Ma, L Pan, Y Shao, G Arya, Y Ke, C Zhang, F Wang, X Zuo, M Li, P Wang | 03/18/2024 |
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DNA-Nanostructure-Guided Assembly of Proteins into Programmable Shapes. Nano letters |
Q Lu, Y Xu, E Poppleton, K Zhou, P Sulc, N Stephanopoulos, Y Ke | 02/07/2024 |
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Controlling Silicification on DNA Origami with Polynucleotide Brushes. Journal of the American Chemical Society |
S Wang, PA Lin, M DeLuca, S Zauscher, G Arya, Y Ke | 01/10/2024 |
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Spatiotemporal Control over Polynucleotide Brush Growth on DNA Origami Nanostructures. Angewandte Chemie (International ed. in English) |
Y Yang, Q Lu, Y Chen, M DeLuca, G Arya, Y Ke, S Zauscher | 11/27/2023 |
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Nature biomedical engineering |
Y Duan, F Szlam, Y Hu, W Chen, R Li, Y Ke, R Sniecinski, K Salaita | 11/01/2023 |
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Angewandte Chemie (International ed. in English) |
J Yang, Y Liang, X Li, Y Zhang, L Qian, Y Ke, C Zhang | 10/23/2023 |
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Circular single-stranded DNA as switchable vector for gene expression in mammalian cells. Nature communications |
L Tang, Z Tian, J Cheng, Y Zhang, Y Song, Y Liu, J Wang, P Zhang, Y Ke, FC Simmel, J Song | 10/20/2023 |
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Building Large DNA Bundles via Controlled Hierarchical Assembly of DNA Tubes. ACS nano |
Y Zhang, D Yang, P Wang, Y Ke | 06/13/2023 |
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Recent Advances in DNA Origami-Engineered Nanomaterials and Applications. Chemical reviews |
P Zhan, A Peil, Q Jiang, D Wang, S Mousavi, Q Xiong, Q Shen, Y Shang, B Ding, C Lin, Y Ke, N Liu | 04/12/2023 |
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Structure-Dependent Electrical Conductance of DNA Origami Nanowires. Chembiochem : a European journal of chemical biology |
J Marrs, Q Lu, V Pan, Y Ke, J Hihath | 01/17/2023 |
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A bistable and reconfigurable molecular system with encodable bonds. Science advances |
C Zhou, D Yang, S Sensale, P Sharma, D Wang, L Yu, G Arya, Y Ke, P Wang | 11/18/2022 |
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Cooperative binding of T cell receptor and CD4 to peptide-MHC enhances antigen sensitivity. Nature communications |
MN Rushdi, V Pan, K Li, HK Choi, S Travaglino, J Hong, F Griffitts, P Agnihotri, RA Mariuzza, Y Ke, C Zhu | 11/17/2022 |
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ACS applied materials & interfaces |
Y Deng, Y Tan, Y Zhang, L Zhang, C Zhang, Y Ke, X Su | 08/03/2022 |
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Stress in DNA Gridiron Facilitates the Formation of Two-Dimensional Crystalline Structures. Journal of the American Chemical Society |
L Yu, J Cheng, D Wang, V Pan, S Chang, J Song, Y Ke | 06/08/2022 |
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DNA Assembly of Modular Components into a Rotary Nanodevice. ACS nano |
A Peil, L Xin, S Both, L Shen, Y Ke, T Weiss, P Zhan, N Liu | 04/26/2022 |
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Spatiotemporal Control of Molecular Cascade Reactions by a Reconfigurable DNA Origami Domino Array. Angewandte Chemie (International ed. in English) |
S Fan, B Ji, Y Liu, K Zou, Z Tian, B Dai, D Cui, P Zhang, Y Ke, J Song | 02/21/2022 |
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Programmable allosteric DNA regulations for molecular networks and nanomachines. Science advances |
C Zhang, X Ma, X Zheng, Y Ke, K Chen, D Liu, Z Lu, J Yang, H Yan | 02/04/2022 |
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Shaped DNA origami carrier nanopore translocation influenced by aptamer based surface modification. Biosensors & bioelectronics |
T Ding, J Yang, J Wang, V Pan, Z Lu, Y Ke, C Zhang | 01/01/2022 |
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Divalent Multilinking Bonds Control Growth and Morphology of Nanopolymers. Nano letters |
Y Xiong, Z Lin, D Mostarac, B Minevich, Q Peng, G Zhu, PA Sánchez, S Kantorovich, Y Ke, O Gang | 12/22/2021 |
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Journal of experimental & clinical cancer research : CR |
L Lang, F Wang, Z Ding, X Zhao, R Loveless, J Xie, C Shay, P Qiu, Y Ke, NF Saba, Y Teng | 12/14/2021 |
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Massively Parallelized Molecular Force Manipulation with On-Demand Thermal and Optical Control. Journal of the American Chemical Society |
H Su, JM Brockman, Y Duan, N Sen, H Chhabra, A Bazrafshan, AT Blanchard, T Meyer, B Andrews, JPK Doye, Y Ke, RB Dyer, K Salaita | 11/24/2021 |
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Monochromatic Fluorescent Barcodes Hierarchically Assembled from Modular DNA Origami Nanorods. ACS nano |
V Pan, W Wang, I Heaven, T Bai, Y Cheng, C Chen, Y Ke, B Wei | 10/26/2021 |
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Programmable Site-Specific Functionalization of DNA Origami with Polynucleotide Brushes. Angewandte Chemie (International ed. in English) |
Y Yang, Q Lu, CM Huang, H Qian, Y Zhang, S Deshpande, G Arya, Y Ke, S Zauscher | 10/18/2021 |
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Mechanically Triggered Hybridization Chain Reaction. Angewandte Chemie (International ed. in English) |
Y Duan, R Glazier, A Bazrafshan, Y Hu, SA Rashid, BG Petrich, Y Ke, K Salaita | 09/01/2021 |
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DNA Nanotechnology-Based Biosensors and Therapeutics. Advanced healthcare materials |
L Shen, P Wang, Y Ke | 08/01/2021 |
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DNA-Grafted 3D Superlattice Self-Assembly. International journal of molecular sciences |
S Wang, X Xie, Z Chen, N Ma, X Zhang, K Li, C Teng, Y Ke, Y Tian | 07/15/2021 |
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DNA origami single crystals with Wulff shapes. Nature communications |
Y Wang, L Dai, Z Ding, M Ji, J Liu, H Xing, X Liu, Y Ke, C Fan, P Wang, Y Tian | 05/21/2021 |
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Accurate genotyping of fragmented DNA using a toehold assisted padlock probe. Biosensors & bioelectronics |
Y Gao, H Qiao, V Pan, Z Wang, J Li, Y Wei, Y Ke, H Qi | 05/01/2021 |
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Programmable Transformations of DNA Origami Made of Small Modular Dynamic Units. Journal of the American Chemical Society |
D Wang, L Yu, CM Huang, G Arya, S Chang, Y Ke | 02/10/2021 |
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ACS nano |
D Wang, R Peng, Y Peng, Z Deng, F Xu, Y Su, P Wang, L Li, XQ Wang, Y Ke, W Tan | 12/22/2020 |
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Low-Bias Manipulation of DNA Oligo Pool for Robust Data Storage. ACS synthetic biology |
Y Gao, X Chen, H Qiao, Y Ke, H Qi | 12/18/2020 |
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Modular Reconfigurable DNA Origami: From Two-Dimensional to Three-Dimensional Structures. Angewandte Chemie (International ed. in English) |
Y Liu, J Cheng, S Fan, H Ge, T Luo, L Tang, B Ji, C Zhang, D Cui, Y Ke, J Song | 12/14/2020 |
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DNA Origami Guided Self-Assembly of Plasmonic Polymers with Robust Long-Range Plasmonic Resonance. Nano letters |
P Wang, JH Huh, H Park, D Yang, Y Zhang, Y Zhang, J Lee, S Lee, Y Ke | 12/09/2020 |
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DNA Origami-Enabled Biosensors. Sensors (Basel, Switzerland) |
S Wang, Z Zhou, N Ma, S Yang, K Li, C Teng, Y Ke, Y Tian | 12/03/2020 |
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Programming the Curvatures in Reconfigurable DNA Domino Origami by Using Asymmetric Units. Nano letters |
D Wang, L Yu, B Ji, S Chang, J Song, Y Ke | 11/11/2020 |
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Journal of the American Chemical Society |
Z Lin, H Emamy, B Minevich, Y Xiong, S Xiang, S Kumar, Y Ke, O Gang | 10/14/2020 |
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Angewandte Chemie (International ed. in English) |
K Zhou, Y Zhou, H Yang, H Jin, Y Ke, Q Wang | 10/05/2020 |
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Live-cell super-resolved PAINT imaging of piconewton cellular traction forces. Nature methods |
JM Brockman, H Su, AT Blanchard, Y Duan, T Meyer, ME Quach, R Glazier, A Bazrafshan, RL Bender, AV Kellner, H Ogasawara, R Ma, F Schueder, BG Petrich, R Jungmann, R Li, AL Mattheyses, Y Ke, K Salaita | 10/01/2020 |
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Proximity-Induced Pattern Operations in Reconfigurable DNA Origami Domino Array. Journal of the American Chemical Society |
S Fan, J Cheng, Y Liu, D Wang, T Luo, B Dai, C Zhang, D Cui, Y Ke, J Song | 08/26/2020 |
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Programmable assembly of gold nanoparticle nanoclusters and lattices. Journal of materials chemistry. B |
L Shen, V Pan, H Li, Y Zhang, P Wang, Y Ke | 08/21/2020 |
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Angewandte Chemie (International ed. in English) |
MA Rahman, P Wang, Z Zhao, D Wang, S Nannapaneni, C Zhang, Z Chen, CC Griffith, SJ Hurwitz, ZG Chen, Y Ke, DM Shin | 07/27/2020 |
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Information Coding in a Reconfigurable DNA Origami Domino Array. Angewandte Chemie (International ed. in English) |
S Fan, D Wang, J Cheng, Y Liu, T Luo, D Cui, Y Ke, J Song | 07/27/2020 |
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Tunable DNA Origami Motors Translocate Ballistically Over μm Distances at nm/s Speeds. Angewandte Chemie (International ed. in English) |
A Bazrafshan, TA Meyer, H Su, JM Brockman, AT Blanchard, S Piranej, Y Duan, Y Ke, K Salaita | 06/08/2020 |
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Programming the Nucleation of DNA Brick Self-Assembly with a Seeding Strand. Angewandte Chemie (International ed. in English) |
Y Zhang, A Reinhardt, P Wang, J Song, Y Ke | 05/25/2020 |
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Programming Surface-Enhanced Raman Scattering of DNA Origami-templated Metamolecules. Nano letters |
C Zhou, Y Yang, H Li, F Gao, C Song, D Yang, F Xu, N Liu, Y Ke, S Su, P Wang | 05/13/2020 |
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Programmable Assembly of Iron Oxide Nanoparticles Using DNA Origami. Nano letters |
TA Meyer, C Zhang, G Bao, Y Ke | 04/08/2020 |
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DNA nanotechnology assisted nanopore-based analysis. Nucleic acids research |
T Ding, J Yang, V Pan, N Zhao, Z Lu, Y Ke, C Zhang | 04/06/2020 |
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Programming Dynamic Assembly of Viral Proteins with DNA Origami. Journal of the American Chemical Society |
K Zhou, Y Zhou, V Pan, Q Wang, Y Ke | 04/01/2020 |
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Chemical science |
H Wu, TT Chen, XN Wang, Y Ke, JH Jiang | 01/07/2020 |
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Electrostatic Complementarity Drives Amyloid/Nucleic Acid Co-Assembly. Angewandte Chemie (International ed. in English) |
AK Rha, D Das, O Taran, Y Ke, AK Mehta, DG Lynn | 01/02/2020 |
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Programming DNA Tube Circumference by Tile Offset Connection. Journal of the American Chemical Society |
Y Zhang, X Chen, G Kang, R Peng, V Pan, R Sundaresan, P Wang, Y Ke | 12/18/2019 |
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Nicking-Assisted Reactant Recycle To Implement Entropy-Driven DNA Circuit. Journal of the American Chemical Society |
C Zhang, Z Wang, Y Liu, J Yang, X Zhang, Y Li, L Pan, Y Ke, H Yan | 10/30/2019 |
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Self-Assembly of DNA-Minocycline Complexes by Metal Ions with Controlled Drug Release. ACS applied materials & interfaces |
T Zhang, J Nong, N Alzahrani, Z Wang, SW Oh, T Meier, DG Yang, Y Ke, Y Zhong, J Fu | 08/21/2019 |
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Hierarchical Self-Assembly of Cholesterol-DNA Nanorods. Bioconjugate chemistry |
Y Zhang, R Peng, F Xu, Y Ke | 07/17/2019 |
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Magnetic Plasmon Networks Programmed by Molecular Self-Assembly. Advanced materials (Deerfield Beach, Fla.) |
P Wang, JH Huh, J Lee, K Kim, KJ Park, S Lee, Y Ke | 07/01/2019 |
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Biomimetic Compartments Scaffolded by Nucleic Acid Nanostructures. Small (Weinheim an der Bergstrasse, Germany) |
J Fu, SW Oh, K Monckton, G Arbuckle-Keil, Y Ke, T Zhang | 06/01/2019 |
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Small (Weinheim an der Bergstrasse, Germany) |
Y Zhang, V Pan, X Li, X Yang, H Li, P Wang, Y Ke | 06/01/2019 |
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Complex wireframe DNA nanostructures from simple building blocks. Nature communications |
W Wang, S Chen, B An, K Huang, T Bai, M Xu, G Bellot, Y Ke, Y Xiang, B Wei | 03/06/2019 |
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Attack on the Cell Membrane: The Pointy Ends of DNA Nanostructures Lead the Way. ACS central science |
P Wang, Y Ke | 10/24/2018 |
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Design and operation of reconfigurable two-dimensional DNA molecular arrays. Nature protocols |
D Wang, J Song, P Wang, V Pan, Y Zhang, D Cui, Y Ke | 10/01/2018 |
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Programmable Multivalent DNA-Origami Tension Probes for Reporting Cellular Traction Forces. Nano letters |
PK Dutta, Y Zhang, AT Blanchard, C Ge, M Rushdi, K Weiss, C Zhu, Y Ke, K Salaita | 08/08/2018 |
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Advanced Cell and Tissue Biomanufacturing. ACS biomaterials science & engineering |
K Ye, DL Kaplan, G Bao, C Bettinger, G Forgacs, C Dong, A Khademhosseini, Y Ke, K Leong, A Sambanis, W Sun, P Yin | 07/09/2018 |
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Selective in Situ Assembly of Viral Protein onto DNA Origami. Journal of the American Chemical Society |
K Zhou, Y Ke, Q Wang | 07/05/2018 |
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Structural DNA Nanotechnology: Artificial Nanostructures for Biomedical Research. Annual review of biomedical engineering |
Y Ke, C Castro, JH Choi | 06/04/2018 |
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Visualization of the Cellular Uptake and Trafficking of DNA Origami Nanostructures in Cancer Cells. Journal of the American Chemical Society |
P Wang, MA Rahman, Z Zhao, K Weiss, C Zhang, Z Chen, SJ Hurwitz, ZG Chen, DM Shin, Y Ke | 02/21/2018 |
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Systemic Delivery of Bc12-Targeting siRNA by DNA Nanoparticles Suppresses Cancer Cell Growth. Angewandte Chemie (International ed. in English) |
MA Rahman, P Wang, Z Zhao, D Wang, S Nannapaneni, C Zhang, Z Chen, CC Griffith, SJ Hurwitz, ZG Chen, Y Ke, DM Shin | 12/11/2017 |
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Programmable self-assembly of three-dimensional nanostructures from 10,000 unique components. Nature |
LL Ong, N Hanikel, OK Yaghi, C Grun, MT Strauss, P Bron, J Lai-Kee-Him, F Schueder, B Wang, P Wang, JY Kishi, C Myhrvold, A Zhu, R Jungmann, G Bellot, Y Ke, P Yin | 12/06/2017 |
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Angewandte Chemie (International ed. in English) |
X Lan, Z Su, Y Zhou, T Meyer, Y Ke, Q Wang, W Chiu, N Liu, S Zou, H Yan, Y Liu | 11/13/2017 |
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Journal of the American Chemical Society |
T Jiang, TA Meyer, C Modlin, X Zuo, VP Conticello, Y Ke | 10/11/2017 |
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Proceedings of the National Academy of Sciences of the United States of America |
D Salas, A Le Gall, JB Fiche, A Valeri, Y Ke, P Bron, G Bellot, M Nollmann | 08/29/2017 |
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Reconfiguration of DNA molecular arrays driven by information relay. Science (New York, N.Y.) |
J Song, Z Li, P Wang, T Meyer, C Mao, Y Ke | 07/28/2017 |
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ACS nano |
P Zhan, PK Dutta, P Wang, G Song, M Dai, SX Zhao, ZG Wang, P Yin, W Zhang, B Ding, Y Ke | 02/28/2017 |
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Methods in molecular biology (Clifton, N.J.) |
LL Ong, Y Ke | 01/01/2017 |
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Methods in molecular biology (Clifton, N.J.) |
Y Ke, P Wang | 01/01/2017 |
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Journal of the American Chemical Society |
P Wang, S Gaitanaros, S Lee, M Bathe, WM Shih, Y Ke | 06/22/2016 |
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Programmable DNA Hydrogels Assembled from Multidomain DNA Strands. Chembiochem : a European journal of chemical biology |
H Jiang, V Pan, S Vivek, ER Weeks, Y Ke | 06/16/2016 |
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Plasmonic Toroidal Metamolecules Assembled by DNA Origami. Journal of the American Chemical Society |
MJ Urban, PK Dutta, P Wang, X Duan, X Shen, B Ding, Y Ke, N Liu | 05/04/2016 |
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Regulation at a distance of biomolecular interactions using a DNA origami nanoactuator. Nature communications |
Y Ke, T Meyer, WM Shih, G Bellot | 03/18/2016 |
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Site-Specific Surface Functionalization of Gold Nanorods Using DNA Origami Clamps. Journal of the American Chemical Society |
C Shen, X Lan, X Lu, TA Meyer, W Ni, Y Ke, Q Wang | 02/17/2016 |
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Nature nanotechnology |
Y Tian, T Wang, W Liu, HL Xin, H Li, Y Ke, WM Shih, O Gang | 07/01/2015 |
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Au nanorod helical superstructures with designed chirality. Journal of the American Chemical Society |
X Lan, X Lu, C Shen, Y Ke, W Ni, Q Wang | 01/14/2015 |
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DNA brick crystals with prescribed depths. Nature chemistry |
Y Ke, LL Ong, W Sun, J Song, M Dong, WM Shih, P Yin | 11/01/2014 |
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Designer three-dimensional DNA architectures. Current opinion in structural biology |
Y Ke | 08/01/2014 |
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DNA origami structures directly assembled from intact bacteriophages. Small (Weinheim an der Bergstrasse, Germany) |
PC Nickels, Y Ke, R Jungmann, DM Smith, M Leichsenring, WM Shih, T Liedl, B Högberg | 05/14/2014 |
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Polyhedra self-assembled from DNA tripods and characterized with 3D DNA-PAINT. Science (New York, N.Y.) |
R Iinuma, Y Ke, R Jungmann, T Schlichthaerle, JB Woehrstein, P Yin | 04/04/2014 |
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Design space for complex DNA structures. Journal of the American Chemical Society |
B Wei, M Dai, C Myhrvold, Y Ke, R Jungmann, P Yin | 12/04/2013 |
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Nature communications |
Z Jin, W Sun, Y Ke, CJ Shih, GL Paulus, Q Hua Wang, B Mu, P Yin, MS Strano | 01/01/2013 |
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Three-dimensional structures self-assembled from DNA bricks. Science (New York, N.Y.) |
Y Ke, LL Ong, WM Shih, P Yin | 11/30/2012 |
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Chemical science |
Y Ke, G Bellot, NV Voigt, E Fradkov, WM Shih | 08/01/2012 |
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Multilayer DNA origami packed on hexagonal and hybrid lattices. Journal of the American Chemical Society |
Y Ke, NV Voigt, KV Gothelf, WM Shih | 01/25/2012 |
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Synthesis and characterization of self-assembled DNA nanostructures. Methods in molecular biology (Clifton, N.J.) |
C Lin, Y Ke, R Chhabra, J Sharma, Y Liu, H Yan | 01/01/2011 |
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Multilayer DNA origami packed on a square lattice. Journal of the American Chemical Society |
Y Ke, SM Douglas, M Liu, J Sharma, A Cheng, A Leung, Y Liu, WM Shih, H Yan | 11/04/2009 |
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Controlled delivery of DNA origami on patterned surfaces. Small (Weinheim an der Bergstrasse, Germany) |
AE Gerdon, SS Oh, K Hsieh, Y Ke, H Yan, HT Soh | 09/01/2009 |
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Scaffolded DNA origami of a DNA tetrahedron molecular container. Nano letters |
Y Ke, J Sharma, M Liu, K Jahn, Y Liu, H Yan | 06/01/2009 |
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Mirror image DNA nanostructures for chiral supramolecular assemblies. Nano letters |
C Lin, Y Ke, Z Li, JH Wang, Y Liu, H Yan | 01/01/2009 |
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Developing DNA tiles for oligonucleotide hybridization assay with higher accuracy and efficiency. Chemical communications (Cambridge, England) |
Y Ke, J Nangreave, H Yan, S Lindsay, Y Liu | 11/21/2008 |
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Subtractive assembly of DNA nanoarchitectures driven by fuel strand displacement. Chemical communications (Cambridge, England) |
Z Li, Y Ke, C Lin, H Yan, Y Liu | 09/28/2008 |
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Self-assembled DNA nanostructures for distance-dependent multivalent ligand-protein binding. Nature nanotechnology |
S Rinker, Y Ke, Y Liu, R Chhabra, H Yan | 07/01/2008 |
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Self-assembled water-soluble nucleic acid probe tiles for label-free RNA hybridization assays. Science (New York, N.Y.) |
Y Ke, S Lindsay, Y Chang, Y Liu, H Yan | 01/11/2008 |
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DNA-tile-directed self-assembly of quantum dots into two-dimensional nanopatterns. Angewandte Chemie (International ed. in English) |
J Sharma, Y Ke, C Lin, R Chhabra, Q Wang, J Nangreave, Y Liu, H Yan | 01/01/2008 |
Awards
In 2014, Dr. Ke received the Billi and Bernie Marcus Research Award from Winship Cancer Institute of Emory University.